RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 FAM117AQ9C073 453 aa18.01■□□□□ 0.47
CCDC88B-203ENST00000359902 CALHM2Q9HA72 323 aa18.01■□□□□ 0.47
CCDC88B-203ENST00000359902 CYTL1Q9NRR1 136 aa18.01■□□□□ 0.47
CCDC88B-203ENST00000359902 ST3GAL6Q9Y274 331 aa18.01■□□□□ 0.47
CCDC88B-203ENST00000359902 A0A096LPE4 126 aa18.01■□□□□ 0.47
CCDC88B-203ENST00000359902 A0A1W2PPZ6 126 aa18.01■□□□□ 0.47
CCDC88B-203ENST00000359902 RPL36A-HNRNPH2H7BZ11 118 aa18.01■□□□□ 0.47
CCDC88B-203ENST00000359902 LOXL4Q96JB6 756 aa18.01■□□□□ 0.47
CCDC88B-203ENST00000359902 TECTBQ96PL2 329 aa18.01■□□□□ 0.47
CCDC88B-203ENST00000359902 ACKR4Q9NPB9 350 aa18.01■□□□□ 0.47
CCDC88B-203ENST00000359902 NECAP2Q9NVZ3 263 aa18.01■□□□□ 0.47
CCDC88B-203ENST00000359902 ATPIF1Q9UII2 106 aa18.01■□□□□ 0.47
CCDC88B-203ENST00000359902 MSGN1A6NI15 193 aa18■□□□□ 0.47
CCDC88B-203ENST00000359902 FOXG1P55316 489 aaPredicted RBP18■□□□□ 0.47
CCDC88B-203ENST00000359902 RAB32Q13637 225 aa18■□□□□ 0.47
CCDC88B-203ENST00000359902 TMEM251Q8N6I4 163 aa18■□□□□ 0.47
CCDC88B-203ENST00000359902 FNDC9Q8TBE3 224 aa18■□□□□ 0.47
CCDC88B-203ENST00000359902 FREM1Q5H8C1 2179 aa18■□□□□ 0.47
CCDC88B-203ENST00000359902 ZNF850A8MQ14 1090 aa18■□□□□ 0.47
CCDC88B-203ENST00000359902 SYNGR4O95473 234 aa18■□□□□ 0.47
CCDC88B-203ENST00000359902 ELP2Q6IA86 826 aa18■□□□□ 0.47
CCDC88B-203ENST00000359902 CALHM1Q8IU99 346 aa18■□□□□ 0.47
CCDC88B-203ENST00000359902 FAM219AQ8IW50 185 aa18■□□□□ 0.47
CCDC88B-203ENST00000359902 SGPP2Q8IWX5 399 aa18■□□□□ 0.47
CCDC88B-203ENST00000359902 C1orf123Q9NWV4 160 aa18■□□□□ 0.47
CCDC88B-203ENST00000359902 GSKIPQ9P0R6 139 aa18■□□□□ 0.47
CCDC88B-203ENST00000359902 IL17BQ9UHF5 180 aa18■□□□□ 0.47
CCDC88B-203ENST00000359902 CRYM-AS1A6NIL9 109 aa17.99■□□□□ 0.47
CCDC88B-203ENST00000359902 RBMXP38159 391 aaKnown RBP17.99■□□□□ 0.47
CCDC88B-203ENST00000359902 RBM39Q14498 530 aaKnown RBP17.99■□□□□ 0.47
CCDC88B-203ENST00000359902 FAM221AA4D161 298 aa17.99■□□□□ 0.47
CCDC88B-203ENST00000359902 HLA-HP01893 362 aa17.99■□□□□ 0.47
CCDC88B-203ENST00000359902 TPT1P13693 172 aaKnown RBP17.99■□□□□ 0.47
CCDC88B-203ENST00000359902 NAAAQ02083 359 aa17.99■□□□□ 0.47
CCDC88B-203ENST00000359902 PDCD1Q15116 288 aa17.99■□□□□ 0.47
CCDC88B-203ENST00000359902 SLC30A7Q8NEW0 376 aa17.99■□□□□ 0.47
CCDC88B-203ENST00000359902 MARS2Q96GW9 593 aaKnown RBP17.99■□□□□ 0.47
CCDC88B-203ENST00000359902 AQP10Q96PS8 301 aa17.99■□□□□ 0.47
CCDC88B-203ENST00000359902 TAS2R3Q9NYW6 316 aa17.99■□□□□ 0.47
CCDC88B-203ENST00000359902 ZNHIT1O43257 154 aa17.98■□□□□ 0.47
CCDC88B-203ENST00000359902 ZNF205O95201 554 aa17.98■□□□□ 0.47
CCDC88B-203ENST00000359902 AIMP2Q13155 320 aaKnown RBP17.98■□□□□ 0.47
CCDC88B-203ENST00000359902 STK11Q15831 433 aa17.98■□□□□ 0.47
CCDC88B-203ENST00000359902 BAP18Q8IXM2 172 aa17.98■□□□□ 0.47
CCDC88B-203ENST00000359902 REPIN1Q9BWE0 567 aaKnown RBP17.98■□□□□ 0.47
CCDC88B-203ENST00000359902 PCDHB16Q9NRJ7 776 aa17.98■□□□□ 0.47
CCDC88B-203ENST00000359902 ZNF503-AS2A6NEH8 195 aa17.98■□□□□ 0.47
CCDC88B-203ENST00000359902 CCL2P13500 99 aa17.98■□□□□ 0.47
CCDC88B-203ENST00000359902 CTRB1P17538 263 aa17.98■□□□□ 0.47
CCDC88B-203ENST00000359902 CCNOP22674 350 aa17.98■□□□□ 0.47
CCDC88B-203ENST00000359902 RBM11P57052 281 aaKnown RBP17.98■□□□□ 0.47
CCDC88B-203ENST00000359902 DAZAP2Q15038 168 aaPredicted RBP17.98■□□□□ 0.47
CCDC88B-203ENST00000359902 PXDC1Q5TGL8 231 aa17.98■□□□□ 0.47
CCDC88B-203ENST00000359902 CTRB2Q6GPI1 263 aa17.98■□□□□ 0.47
CCDC88B-203ENST00000359902 ZNF611Q8N823 705 aa17.98■□□□□ 0.47
CCDC88B-203ENST00000359902 PRRG4Q9BZD6 226 aa17.98■□□□□ 0.47
CCDC88B-203ENST00000359902 MS4A7Q9GZW8 240 aaPredicted RBP17.98■□□□□ 0.47
CCDC88B-203ENST00000359902 NCOR1O75376 2440 aa17.97■□□□□ 0.47
CCDC88B-203ENST00000359902 KMT2EQ8IZD2 1858 aa17.97■□□□□ 0.47
CCDC88B-203ENST00000359902 KNTC1P50748 2209 aa17.97■□□□□ 0.47
CCDC88B-203ENST00000359902 PDCD6O75340 191 aa17.97■□□□□ 0.47
CCDC88B-203ENST00000359902 PLGLB1Q02325 96 aa17.97■□□□□ 0.47
CCDC88B-203ENST00000359902 DHRS13Q6UX07 377 aa17.97■□□□□ 0.47
CCDC88B-203ENST00000359902 SLC25A26Q70HW3 274 aa17.97■□□□□ 0.47
CCDC88B-203ENST00000359902 C5orf49A4QMS7 147 aa17.97■□□□□ 0.47
CCDC88B-203ENST00000359902 ZNF724A8MTY0 619 aa17.97■□□□□ 0.47
CCDC88B-203ENST00000359902 FGF16O43320 207 aa17.97■□□□□ 0.47
CCDC88B-203ENST00000359902 TSPAN9O75954 239 aa17.97■□□□□ 0.47
CCDC88B-203ENST00000359902 NPBWR2P48146 333 aa17.97■□□□□ 0.47
CCDC88B-203ENST00000359902 MALLQ13021 153 aa17.97■□□□□ 0.47
CCDC88B-203ENST00000359902 OR56B2PQ8NGI1 322 aa17.97■□□□□ 0.47
CCDC88B-203ENST00000359902 DNAJB11Q9UBS4 358 aa17.97■□□□□ 0.47
CCDC88B-203ENST00000359902 MEMO1Q9Y316 297 aa17.97■□□□□ 0.47
CCDC88B-203ENST00000359902 MED13Q9UHV7 2174 aa17.96■□□□□ 0.47
CCDC88B-203ENST00000359902 BET1O15155 118 aa17.96■□□□□ 0.47
CCDC88B-203ENST00000359902 PET100P0DJ07 73 aa17.96■□□□□ 0.47
CCDC88B-203ENST00000359902 ZNF728P0DKX0 622 aa17.96■□□□□ 0.47
CCDC88B-203ENST00000359902 PIGPP57054 158 aa17.96■□□□□ 0.47
CCDC88B-203ENST00000359902 IAH1Q2TAA2 248 aaPredicted RBP17.96■□□□□ 0.47
CCDC88B-203ENST00000359902 SLC22A25Q6T423 547 aa17.96■□□□□ 0.47
CCDC88B-203ENST00000359902 Q6ZPA2 131 aa17.96■□□□□ 0.47
CCDC88B-203ENST00000359902 TOMM40LQ969M1 308 aa17.96■□□□□ 0.47
CCDC88B-203ENST00000359902 RNF122Q9H9V4 155 aa17.96■□□□□ 0.47
CCDC88B-203ENST00000359902 PQLC2LA1A4F0 135 aa17.95■□□□□ 0.46
CCDC88B-203ENST00000359902 SP1P08047 785 aa17.95■□□□□ 0.46
CCDC88B-203ENST00000359902 COX5BP10606 129 aa17.95■□□□□ 0.46
CCDC88B-203ENST00000359902 FUT3P21217 361 aa17.95■□□□□ 0.46
CCDC88B-203ENST00000359902 S100A10P60903 97 aa17.95■□□□□ 0.46
CCDC88B-203ENST00000359902 BTN1A1Q13410 526 aa17.95■□□□□ 0.46
CCDC88B-203ENST00000359902 Q8NFD4 153 aa17.95■□□□□ 0.46
CCDC88B-203ENST00000359902 APH1AQ96BI3 265 aa17.95■□□□□ 0.46
CCDC88B-203ENST00000359902 C12orf4Q9NQ89 552 aa17.95■□□□□ 0.46
CCDC88B-203ENST00000359902 CRIM1Q9NZV1 1036 aa17.95■□□□□ 0.46
CCDC88B-203ENST00000359902 PCDHB10Q9UN67 800 aa17.95■□□□□ 0.46
CCDC88B-203ENST00000359902 TNFSF15O95150 251 aa17.95■□□□□ 0.46
CCDC88B-203ENST00000359902 ZNF585AQ6P3V2 769 aa17.95■□□□□ 0.46
CCDC88B-203ENST00000359902 BATF2Q8N1L9 274 aa17.95■□□□□ 0.46
CCDC88B-203ENST00000359902 OR1S2Q8NGQ3 325 aa17.95■□□□□ 0.46
CCDC88B-203ENST00000359902 PAPOLGQ9BWT3 736 aaKnown RBP17.95■□□□□ 0.46
CCDC88B-203ENST00000359902 SLC5A7Q9GZV3 580 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms