RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 GLS2Q9UI32 602 aa18.87■□□□□ 0.61
SHMT1-202ENST00000352886 ARID1AO14497 2285 aa18.87■□□□□ 0.61
SHMT1-202ENST00000352886 ZNF816-ZNF321PA0A0X1KG74 233 aa18.86■□□□□ 0.61
SHMT1-202ENST00000352886 ZNF205O95201 554 aa18.86■□□□□ 0.61
SHMT1-202ENST00000352886 RBM39Q14498 530 aaKnown RBP18.86■□□□□ 0.61
SHMT1-202ENST00000352886 AQP10Q96PS8 301 aa18.86■□□□□ 0.61
SHMT1-202ENST00000352886 ST3GAL6Q9Y274 331 aa18.86■□□□□ 0.61
SHMT1-202ENST00000352886 LNP1A1A4G5 178 aa18.86■□□□□ 0.61
SHMT1-202ENST00000352886 FAM221AA4D161 298 aa18.86■□□□□ 0.61
SHMT1-202ENST00000352886 XRCC2O43543 280 aa18.86■□□□□ 0.61
SHMT1-202ENST00000352886 ABHD17BQ5VST6 288 aa18.86■□□□□ 0.61
SHMT1-202ENST00000352886 C9orf135Q5VTT2 229 aa18.86■□□□□ 0.61
SHMT1-202ENST00000352886 TFAP2EQ6VUC0 442 aa18.86■□□□□ 0.61
SHMT1-202ENST00000352886 FOXRED2Q8IWF2 684 aa18.86■□□□□ 0.61
SHMT1-202ENST00000352886 BPIFCQ8NFQ6 507 aa18.86■□□□□ 0.61
SHMT1-202ENST00000352886 BCO1Q9HAY6 547 aa18.86■□□□□ 0.61
SHMT1-202ENST00000352886 SLC7A10Q9NS82 523 aa18.86■□□□□ 0.61
SHMT1-202ENST00000352886 MEMO1Q9Y316 297 aa18.86■□□□□ 0.61
SHMT1-202ENST00000352886 CRYM-AS1A6NIL9 109 aa18.85■□□□□ 0.61
SHMT1-202ENST00000352886 LHX2P50458 406 aa18.85■□□□□ 0.61
SHMT1-202ENST00000352886 ZNF585AQ6P3V2 769 aa18.85■□□□□ 0.61
SHMT1-202ENST00000352886 TMED6Q8WW62 240 aa18.85■□□□□ 0.61
SHMT1-202ENST00000352886 C1QTNF5Q9BXJ0 243 aa18.85■□□□□ 0.61
SHMT1-202ENST00000352886 PIGMQ9H3S5 423 aa18.85■□□□□ 0.61
SHMT1-202ENST00000352886 A0A1W2PNU3 283 aaPredicted RBP18.85■□□□□ 0.61
SHMT1-202ENST00000352886 LINC01387J3KSC0 135 aa18.85■□□□□ 0.61
SHMT1-202ENST00000352886 FGF16O43320 207 aa18.85■□□□□ 0.61
SHMT1-202ENST00000352886 PRKACAP17612 351 aa18.85■□□□□ 0.61
SHMT1-202ENST00000352886 PDCD1Q15116 288 aa18.85■□□□□ 0.61
SHMT1-202ENST00000352886 IAH1Q2TAA2 248 aaPredicted RBP18.85■□□□□ 0.61
SHMT1-202ENST00000352886 CDCP2Q5VXM1 449 aa18.85■□□□□ 0.61
SHMT1-202ENST00000352886 TOMM40LQ969M1 308 aa18.85■□□□□ 0.61
SHMT1-202ENST00000352886 NARS2Q96I59 477 aaKnown RBP18.85■□□□□ 0.61
SHMT1-202ENST00000352886 IL36GQ9NZH8 169 aa18.85■□□□□ 0.61
SHMT1-202ENST00000352886 IGKV3D-15A0A087WSY6 115 aa18.84■□□□□ 0.61
SHMT1-202ENST00000352886 ARF1P84077 181 aaKnown RBP18.84■□□□□ 0.61
SHMT1-202ENST00000352886 CCDC36Q8IYA8 594 aa18.84■□□□□ 0.61
SHMT1-202ENST00000352886 MARC2Q969Z3 335 aa18.84■□□□□ 0.61
SHMT1-202ENST00000352886 MARS2Q96GW9 593 aaKnown RBP18.84■□□□□ 0.61
SHMT1-202ENST00000352886 LDAHQ9H6V9 325 aa18.84■□□□□ 0.61
SHMT1-202ENST00000352886 B4GALT7Q9UBV7 327 aa18.84■□□□□ 0.61
SHMT1-202ENST00000352886 PIGPP57054 158 aa18.84■□□□□ 0.61
SHMT1-202ENST00000352886 NRN1LQ496H8 165 aa18.84■□□□□ 0.61
SHMT1-202ENST00000352886 ATRAIDQ6UW56 229 aa18.84■□□□□ 0.61
SHMT1-202ENST00000352886 DHRS11Q6UWP2 260 aa18.84■□□□□ 0.61
SHMT1-202ENST00000352886 CALHM1Q8IU99 346 aa18.84■□□□□ 0.61
SHMT1-202ENST00000352886 SPSB4Q96A44 273 aa18.84■□□□□ 0.61
SHMT1-202ENST00000352886 PRDM14Q9GZV8 571 aa18.84■□□□□ 0.61
SHMT1-202ENST00000352886 DNAJB11Q9UBS4 358 aa18.84■□□□□ 0.61
SHMT1-202ENST00000352886 A0A096LPE4 126 aa18.83■□□□□ 0.61
SHMT1-202ENST00000352886 A0A1W2PPZ6 126 aa18.83■□□□□ 0.61
SHMT1-202ENST00000352886 FAM166BA8MTA8 275 aa18.83■□□□□ 0.61
SHMT1-202ENST00000352886 CCNOP22674 350 aa18.83■□□□□ 0.61
SHMT1-202ENST00000352886 CLDN18P56856 261 aa18.83■□□□□ 0.61
SHMT1-202ENST00000352886 TMEM200AQ86VY9 491 aa18.83■□□□□ 0.61
SHMT1-202ENST00000352886 TUSC5Q8IXB3 177 aa18.83■□□□□ 0.61
SHMT1-202ENST00000352886 FNDC9Q8TBE3 224 aa18.83■□□□□ 0.61
SHMT1-202ENST00000352886 RNF141Q8WVD5 230 aa18.83■□□□□ 0.61
SHMT1-202ENST00000352886 SLC5A7Q9GZV3 580 aa18.83■□□□□ 0.61
SHMT1-202ENST00000352886 OR2S2Q9NQN1 319 aa18.83■□□□□ 0.61
SHMT1-202ENST00000352886 ZNHIT1O43257 154 aa18.83■□□□□ 0.6
SHMT1-202ENST00000352886 MAGEA5P43359 124 aa18.83■□□□□ 0.6
SHMT1-202ENST00000352886 SLC22A25Q6T423 547 aa18.83■□□□□ 0.6
SHMT1-202ENST00000352886 BATF2Q8N1L9 274 aa18.83■□□□□ 0.6
SHMT1-202ENST00000352886 TECTBQ96PL2 329 aa18.83■□□□□ 0.6
SHMT1-202ENST00000352886 CALHM2Q9HA72 323 aa18.83■□□□□ 0.6
SHMT1-202ENST00000352886 DNAJC13O75165 2243 aa18.83■□□□□ 0.6
SHMT1-202ENST00000352886 ZNF407Q9C0G0 2248 aa18.83■□□□□ 0.6
SHMT1-202ENST00000352886 ITGA3P26006 1051 aa18.82■□□□□ 0.6
SHMT1-202ENST00000352886 FXYD4P59646 89 aa18.82■□□□□ 0.6
SHMT1-202ENST00000352886 OR1C1Q15619 314 aa18.82■□□□□ 0.6
SHMT1-202ENST00000352886 ZNF611Q8N823 705 aa18.82■□□□□ 0.6
SHMT1-202ENST00000352886 LINC00470Q9BZP3 86 aa18.82■□□□□ 0.6
SHMT1-202ENST00000352886 SLC6A15Q9H2J7 730 aa18.82■□□□□ 0.6
SHMT1-202ENST00000352886 TMEM100Q9NV29 134 aa18.82■□□□□ 0.6
SHMT1-202ENST00000352886 PLA2G3Q9NZ20 509 aa18.82■□□□□ 0.6
SHMT1-202ENST00000352886 ZNF728P0DKX0 622 aa18.82■□□□□ 0.6
SHMT1-202ENST00000352886 RBM11P57052 281 aaKnown RBP18.82■□□□□ 0.6
SHMT1-202ENST00000352886 MRPL24Q96A35 216 aaKnown RBP18.82■□□□□ 0.6
SHMT1-202ENST00000352886 CNTNAP3BQ96NU0 1288 aa18.82■□□□□ 0.6
SHMT1-202ENST00000352886 CNTNAP3Q9BZ76 1288 aa18.82■□□□□ 0.6
SHMT1-202ENST00000352886 TTTY12Q9BZ98 90 aa18.82■□□□□ 0.6
SHMT1-202ENST00000352886 PARPBPQ9NWS1 579 aa18.82■□□□□ 0.6
SHMT1-202ENST00000352886 KMT2EQ8IZD2 1858 aa18.82■□□□□ 0.6
SHMT1-202ENST00000352886 GPR179Q6PRD1 2367 aa18.81■□□□□ 0.6
SHMT1-202ENST00000352886 NUPL2O15504 423 aaKnown RBP18.81■□□□□ 0.6
SHMT1-202ENST00000352886 PDCD6O75340 191 aa18.81■□□□□ 0.6
SHMT1-202ENST00000352886 ZNF708P17019 499 aa18.81■□□□□ 0.6
SHMT1-202ENST00000352886 ARHGDIBP52566 201 aa18.81■□□□□ 0.6
SHMT1-202ENST00000352886 DEFA5Q01523 94 aa18.81■□□□□ 0.6
SHMT1-202ENST00000352886 MALLQ13021 153 aa18.81■□□□□ 0.6
SHMT1-202ENST00000352886 STK11Q15831 433 aa18.81■□□□□ 0.6
SHMT1-202ENST00000352886 TMEM164Q5U3C3 297 aa18.81■□□□□ 0.6
SHMT1-202ENST00000352886 GGNBP1Q5YKI7 109 aa18.81■□□□□ 0.6
SHMT1-202ENST00000352886 LINC00696Q6ZRV3 163 aa18.81■□□□□ 0.6
SHMT1-202ENST00000352886 COLCA1Q6ZS62 124 aa18.81■□□□□ 0.6
SHMT1-202ENST00000352886 SLC25A26Q70HW3 274 aa18.81■□□□□ 0.6
SHMT1-202ENST00000352886 GPR87Q9BY21 358 aa18.81■□□□□ 0.6
SHMT1-202ENST00000352886 PCDHB16Q9NRJ7 776 aa18.81■□□□□ 0.6
SHMT1-202ENST00000352886 MED13Q9UHV7 2174 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms