RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 PRSS58Q8IYP2 241 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 LINC00469Q8N7U9 141 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 OR52E2Q8NGJ4 325 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 OR51E1Q8TCB6 317 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 LGALS14Q8TCE9 139 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 CCDC12Q8WUD4 166 aaPredicted RBP1.97□□□□□ -2.09
HMGB1-201ENST00000326004 FRZBQ92765 325 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 TMEM230Q96A57 120 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 CCDC124Q96CT7 223 aaKnown RBP1.97□□□□□ -2.09
HMGB1-201ENST00000326004 PDXPQ96GD0 296 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 ZNF681Q96N22 645 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 SCGB3A2Q96PL1 93 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 TRNT1Q96Q11 434 aaKnown RBP1.97□□□□□ -2.09
HMGB1-201ENST00000326004 TSC22D3Q99576 134 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 SPIN2AQ99865 258 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 SPIN2BQ9BPZ2 258 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 UQCC2Q9BRT2 126 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 UTP23Q9BRU9 249 aaKnown RBP1.97□□□□□ -2.09
HMGB1-201ENST00000326004 CENPHQ9H3R5 247 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 ZNF430Q9H8G1 570 aaPredicted RBP1.97□□□□□ -2.09
HMGB1-201ENST00000326004 BATF3Q9NR55 127 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 RHBDL2Q9NX52 303 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 SLC39A1Q9NY26 324 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 ZNRD1Q9P1U0 126 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 STX18Q9P2W9 335 aaKnown RBP1.97□□□□□ -2.09
HMGB1-201ENST00000326004 ENPP5Q9UJA9 477 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 PAIP2BQ9ULR5 123 aaKnown RBP1.97□□□□□ -2.09
HMGB1-201ENST00000326004 TMEM14AQ9Y6G1 99 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 DUOX1Q9NRD9 1551 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 EP300Q09472 2414 aaPredicted RBP1.97□□□□□ -2.09
HMGB1-201ENST00000326004 TMEM131Q92545 1883 aa1.97□□□□□ -2.09
HMGB1-201ENST00000326004 DMXL1Q9Y485 3027 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 CEP250Q9BV73 2442 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 LAMB1P07942 1786 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 A0A0A6YYD5 115 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 TMEM150BA6NC51 233 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 TRPC5OSA6NMA1 111 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 H3BQF6 201 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 H7C1H1 209 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 K7EN84 100 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 PRMT5O14744 637 aaPredicted RBP1.96□□□□□ -2.1
HMGB1-201ENST00000326004 PFDN1O60925 122 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 SMIM24O75264 130 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 RP2O75695 350 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 TRAPPC6AO75865 159 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 VAMP5O95183 116 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 BRI3O95415 125 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 RPN2P04844 631 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 EIF4EP06730 217 aaKnown RBP1.96□□□□□ -2.1
HMGB1-201ENST00000326004 PGA5P0DJD9 388 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 GFAPP14136 432 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 TCP1P17987 556 aaKnown RBP1.96□□□□□ -2.1
HMGB1-201ENST00000326004 RAB5AP20339 215 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 IL32P24001 234 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 S100A5P33763 92 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 MAP3K7CLP57077 242 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 KRTAP10-8P60410 259 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 PAFAH1B2P68402 229 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 DYNC1I2Q13409 638 aaKnown RBP1.96□□□□□ -2.1
HMGB1-201ENST00000326004 TFDP2Q14188 446 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 QPRTQ15274 297 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 IRF4Q15306 451 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 SNCBQ16143 134 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 Q5W150 140 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 ZNF470Q6ECI4 717 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 CLEC6AQ6EIG7 209 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 ARL9Q6T311 187 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 MRPL55Q7Z7F7 128 aaKnown RBP1.96□□□□□ -2.1
HMGB1-201ENST00000326004 FAM71AQ8IYT1 594 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 FAM9CQ8IZT9 166 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 NPWQ8N729 165 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 SNX31Q8N9S9 440 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 WDR31Q8NA23 367 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 OR6K6Q8NGW6 343 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 OR6N2Q8NGY6 317 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 CDKL2Q92772 493 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 LRRC45Q96CN5 670 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 GALNT14Q96FL9 552 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 GPR21Q99679 349 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 DRC3Q9H069 523 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 VCX3AQ9NNX9 186 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 MS4A12Q9NXJ0 267 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 OPN4Q9UHM6 478 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 MRM2Q9UI43 246 aaKnown RBP1.96□□□□□ -2.1
HMGB1-201ENST00000326004 NXT1Q9UKK6 140 aaKnown RBP1.96□□□□□ -2.1
HMGB1-201ENST00000326004 MGAMO43451 1857 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 RALGAPA2Q2PPJ7 1873 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 SPEGQ15772 3267 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 TEX15Q9BXT5 2789 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 ABCC12Q96J65 1359 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 CFAP46Q8IYW2 2715 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 WDR87Q6ZQQ6 2873 aa1.96□□□□□ -2.1
HMGB1-201ENST00000326004 LOC105371267A0A1B0GV96 52 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 A0A1W2PQ67 120 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 MGAT4DA6NG13 374 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 TVP23AA6NH52 213 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 ZNF705GA8MUZ8 300 aaPredicted RBP1.95□□□□□ -2.1
HMGB1-201ENST00000326004 ZW10O43264 779 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 SLC16A7O60669 478 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 CDK14O94921 469 aa1.95□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 102.8 ms