RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 OR10V1Q8NGI7 309 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 MEGF10Q96KG7 1140 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 PDCD6O75340 191 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 RPLP1P05386 114 aaKnown RBP15.43■□□□□ 0.06
SYNPO-201ENST00000307662 ZNF25P17030 456 aaPredicted RBP15.43■□□□□ 0.06
SYNPO-201ENST00000307662 Q1RN00 199 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 NUFIP2Q7Z417 695 aaKnown RBP15.43■□□□□ 0.06
SYNPO-201ENST00000307662 ZNF683Q8IZ20 524 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 DEFB127Q9H1M4 99 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 NUP205Q92621 2012 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 BMPR1BO00238 502 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 DSCR4P56555 118 aaPredicted RBP15.43■□□□□ 0.06
SYNPO-201ENST00000307662 SPCS3P61009 180 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 POLR2GP62487 172 aaKnown RBP eCLIP15.43■□□□□ 0.06
SYNPO-201ENST00000307662 KMT5CQ86Y97 462 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 C17orf78Q8N4C9 275 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 CHAC2Q8WUX2 184 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 PRSS50Q9UI38 385 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 NEU3Q9UQ49 428 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 HRASP01112 189 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 FAM109BQ6ICB4 259 aaPredicted RBP15.43■□□□□ 0.06
SYNPO-201ENST00000307662 PTCRAQ6ISU1 281 aaPredicted RBP15.43■□□□□ 0.06
SYNPO-201ENST00000307662 PET117Q6UWS5 81 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 OR4D11Q8NGI4 311 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 SPACA9Q96E40 222 aaPredicted RBP15.43■□□□□ 0.06
SYNPO-201ENST00000307662 TMEM147Q9BVK8 224 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 PRR13Q9NZ81 148 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 FRRS1LQ9P0K9 344 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 CCL11P51671 97 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 ZNF141Q15928 474 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 TMEM215Q68D42 235 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 BTNL3Q6UXE8 466 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 LIAT1Q6ZQX7 453 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 CA10Q9NS85 328 aa15.43■□□□□ 0.06
SYNPO-201ENST00000307662 KLF13Q9Y2Y9 288 aaPredicted RBP15.43■□□□□ 0.06
SYNPO-201ENST00000307662 SOX15O60248 233 aa15.42■□□□□ 0.06
SYNPO-201ENST00000307662 GNG3P63215 75 aa15.42■□□□□ 0.06
SYNPO-201ENST00000307662 IGFBP7Q16270 282 aa15.42■□□□□ 0.06
SYNPO-201ENST00000307662 ZNF707Q96C28 371 aaPredicted RBP15.42■□□□□ 0.06
SYNPO-201ENST00000307662 MSL2Q9HCI7 577 aa15.42■□□□□ 0.06
SYNPO-201ENST00000307662 M0R1X1 148 aa15.42■□□□□ 0.06
SYNPO-201ENST00000307662 TMEM91Q6ZNR0 172 aa15.42■□□□□ 0.06
SYNPO-201ENST00000307662 HES4Q9HCC6 221 aa15.42■□□□□ 0.06
SYNPO-201ENST00000307662 FKBP11Q9NYL4 201 aa15.42■□□□□ 0.06
SYNPO-201ENST00000307662 CCL27Q9Y4X3 112 aa15.42■□□□□ 0.06
SYNPO-201ENST00000307662 H3BMH7 237 aa15.42■□□□□ 0.06
SYNPO-201ENST00000307662 RHOBP62745 196 aa15.42■□□□□ 0.06
SYNPO-201ENST00000307662 TMEM97Q5BJF2 176 aa15.42■□□□□ 0.06
SYNPO-201ENST00000307662 ACSM6Q6P461 480 aa15.42■□□□□ 0.06
SYNPO-201ENST00000307662 BCL2L2Q92843 193 aaPredicted RBP15.42■□□□□ 0.06
SYNPO-201ENST00000307662 PTP4A1Q93096 173 aa15.42■□□□□ 0.06
SYNPO-201ENST00000307662 MRGPRX1Q96LB2 322 aa15.42■□□□□ 0.06
SYNPO-201ENST00000307662 SHISA8B8ZZ34 492 aa15.42■□□□□ 0.06
SYNPO-201ENST00000307662 OR10J1P30954 320 aa15.42■□□□□ 0.06
SYNPO-201ENST00000307662 VWA1Q6PCB0 445 aa15.42■□□□□ 0.06
SYNPO-201ENST00000307662 LINC01555Q8NAE3 123 aa15.42■□□□□ 0.06
SYNPO-201ENST00000307662 ZNF764Q96H86 408 aaPredicted RBP15.42■□□□□ 0.06
SYNPO-201ENST00000307662 A0A1B0GTQ1 180 aa15.41■□□□□ 0.06
SYNPO-201ENST00000307662 OR2J3O76001 311 aa15.41■□□□□ 0.06
SYNPO-201ENST00000307662 HLA-GP17693 338 aa15.41■□□□□ 0.06
SYNPO-201ENST00000307662 DYRK2Q92630 601 aa15.41■□□□□ 0.06
SYNPO-201ENST00000307662 EID2BQ96D98 161 aa15.41■□□□□ 0.06
SYNPO-201ENST00000307662 MENTQ9BUN1 341 aa15.41■□□□□ 0.06
SYNPO-201ENST00000307662 ACAA1P09110 424 aaPredicted RBP15.41■□□□□ 0.06
SYNPO-201ENST00000307662 SCGB1C2P0DMR2 95 aa15.41■□□□□ 0.06
SYNPO-201ENST00000307662 CTLA4P16410 223 aa15.41■□□□□ 0.06
SYNPO-201ENST00000307662 LRP11Q86VZ4 500 aa15.41■□□□□ 0.06
SYNPO-201ENST00000307662 FGF14Q92915 247 aa15.41■□□□□ 0.06
SYNPO-201ENST00000307662 TAAR3PQ9P1P4 343 aa15.41■□□□□ 0.06
SYNPO-201ENST00000307662 PITPNC1Q9UKF7 332 aa15.41■□□□□ 0.06
SYNPO-201ENST00000307662 TNFSF18Q9UNG2 199 aa15.41■□□□□ 0.06
SYNPO-201ENST00000307662 H3BQ15 152 aa15.41■□□□□ 0.06
SYNPO-201ENST00000307662 OR5AL1P0C617 328 aa15.41■□□□□ 0.06
SYNPO-201ENST00000307662 OR10C1Q96KK4 312 aa15.41■□□□□ 0.06
SYNPO-201ENST00000307662 PPP1R3EQ9H7J1 279 aa15.41■□□□□ 0.06
SYNPO-201ENST00000307662 ST8SIA5O15466 376 aa15.41■□□□□ 0.06
SYNPO-201ENST00000307662 CRYAAP02489 173 aa15.41■□□□□ 0.06
SYNPO-201ENST00000307662 MDH2P40926 338 aaKnown RBP15.41■□□□□ 0.06
SYNPO-201ENST00000307662 TMEM230Q96A57 120 aa15.41■□□□□ 0.06
SYNPO-201ENST00000307662 ZMIZ1Q9ULJ6 1067 aa15.41■□□□□ 0.06
SYNPO-201ENST00000307662 ZNF273Q14593 569 aa15.4■□□□□ 0.06
SYNPO-201ENST00000307662 C21orf62-AS1Q17RA5 79 aa15.4■□□□□ 0.06
SYNPO-201ENST00000307662 MCHR2Q969V1 340 aa15.4■□□□□ 0.06
SYNPO-201ENST00000307662 PLPP3O14495 311 aa15.4■□□□□ 0.06
SYNPO-201ENST00000307662 CIDEAO60543 219 aa15.4■□□□□ 0.06
SYNPO-201ENST00000307662 ELOBQ15370 118 aa15.4■□□□□ 0.06
SYNPO-201ENST00000307662 ADAT1Q9BUB4 502 aaKnown RBP15.4■□□□□ 0.06
SYNPO-201ENST00000307662 VAX2Q9UIW0 290 aa15.4■□□□□ 0.06
SYNPO-201ENST00000307662 NGFP01138 241 aa15.4■□□□□ 0.06
SYNPO-201ENST00000307662 MOGAT1Q96PD6 335 aa15.4■□□□□ 0.06
SYNPO-201ENST00000307662 C10orf111Q8N326 155 aa15.4■□□□□ 0.06
SYNPO-201ENST00000307662 ANGPTL4Q9BY76 406 aa15.4■□□□□ 0.06
SYNPO-201ENST00000307662 ANXA10Q9UJ72 324 aa15.4■□□□□ 0.06
SYNPO-201ENST00000307662 PROCRQ9UNN8 238 aa15.4■□□□□ 0.06
SYNPO-201ENST00000307662 TRGV10A0A0A0MS01 117 aa15.39■□□□□ 0.06
SYNPO-201ENST00000307662 ERVH48-1M5A8F1 160 aa15.39■□□□□ 0.06
SYNPO-201ENST00000307662 GEMIN2O14893 280 aaKnown RBP15.39■□□□□ 0.06
SYNPO-201ENST00000307662 SLC25A5P05141 298 aaKnown RBP15.39■□□□□ 0.06
SYNPO-201ENST00000307662 CXCL2P19875 107 aa15.39■□□□□ 0.06
SYNPO-201ENST00000307662 SPATA46Q5T0L3 261 aa15.39■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms