RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 CLEC7AQ9BXN2 247 aa11.84□□□□□ -0.51
CCDC88B-201ENST00000301897 SEBOXQ9HB31 216 aaPredicted RBP11.84□□□□□ -0.51
CCDC88B-201ENST00000301897 ZMAT5Q9UDW3 170 aaKnown RBP11.84□□□□□ -0.51
CCDC88B-201ENST00000301897 SLC7A11Q9UPY5 501 aa11.84□□□□□ -0.51
CCDC88B-201ENST00000301897 IGHV2-26A0A0B4J1V2 119 aa11.83□□□□□ -0.52
CCDC88B-201ENST00000301897 CST1P01037 141 aa11.83□□□□□ -0.52
CCDC88B-201ENST00000301897 OSMP13725 252 aa11.83□□□□□ -0.52
CCDC88B-201ENST00000301897 HTR1DP28221 377 aa11.83□□□□□ -0.52
CCDC88B-201ENST00000301897 CDK5Q00535 292 aa11.83□□□□□ -0.52
CCDC88B-201ENST00000301897 APOFQ13790 326 aa11.83□□□□□ -0.52
CCDC88B-201ENST00000301897 BCL2L15Q5TBC7 163 aa11.83□□□□□ -0.52
CCDC88B-201ENST00000301897 SLX4IPQ5VYV7 408 aa11.83□□□□□ -0.52
CCDC88B-201ENST00000301897 CCDC121Q6ZUS5 278 aa11.83□□□□□ -0.52
CCDC88B-201ENST00000301897 BBS1Q8NFJ9 593 aa11.83□□□□□ -0.52
CCDC88B-201ENST00000301897 MYDGFQ969H8 173 aa11.83□□□□□ -0.52
CCDC88B-201ENST00000301897 CEP19Q96LK0 163 aa11.83□□□□□ -0.52
CCDC88B-201ENST00000301897 B9D2Q9BPU9 175 aa11.83□□□□□ -0.52
CCDC88B-201ENST00000301897 TMEM133Q9H2Q1 129 aa11.83□□□□□ -0.52
CCDC88B-201ENST00000301897 GPR173Q9NS66 373 aa11.83□□□□□ -0.52
CCDC88B-201ENST00000301897 TAS2R1Q9NYW7 299 aa11.83□□□□□ -0.52
CCDC88B-201ENST00000301897 IKZF2Q9UKS7 526 aa11.83□□□□□ -0.52
CCDC88B-201ENST00000301897 GTF2A1LQ9UNN4 478 aa11.83□□□□□ -0.52
CCDC88B-201ENST00000301897 ARL2BPQ9Y2Y0 163 aa11.83□□□□□ -0.52
CCDC88B-201ENST00000301897 V9GYS6 101 aa11.83□□□□□ -0.52
CCDC88B-201ENST00000301897 WI2-2373I1.2A0A1W2PRP0 233 aa11.82□□□□□ -0.52
CCDC88B-201ENST00000301897 LOC110117498-PIK3R3F6TDL0 507 aa11.82□□□□□ -0.52
CCDC88B-201ENST00000301897 PSMD9O00233 223 aa11.82□□□□□ -0.52
CCDC88B-201ENST00000301897 DCTN3O75935 186 aa11.82□□□□□ -0.52
CCDC88B-201ENST00000301897 TTRP02766 147 aa11.82□□□□□ -0.52
CCDC88B-201ENST00000301897 PEX2P28328 305 aa11.82□□□□□ -0.52
CCDC88B-201ENST00000301897 HCCSP53701 268 aa11.82□□□□□ -0.52
CCDC88B-201ENST00000301897 MS4A2Q01362 244 aa11.82□□□□□ -0.52
CCDC88B-201ENST00000301897 Q8IYB0 196 aa11.82□□□□□ -0.52
CCDC88B-201ENST00000301897 ENTHD1Q8IYW4 607 aa11.82□□□□□ -0.52
CCDC88B-201ENST00000301897 OR51D1Q8NGF3 324 aa11.82□□□□□ -0.52
CCDC88B-201ENST00000301897 MNTQ99583 582 aa11.82□□□□□ -0.52
CCDC88B-201ENST00000301897 DPM3Q9P2X0 92 aa11.82□□□□□ -0.52
CCDC88B-201ENST00000301897 GLS2Q9UI32 602 aa11.82□□□□□ -0.52
CCDC88B-201ENST00000301897 B2RBV5 119 aa11.81□□□□□ -0.52
CCDC88B-201ENST00000301897 M0QZK8 103 aa11.81□□□□□ -0.52
CCDC88B-201ENST00000301897 GNGT2O14610 69 aa11.81□□□□□ -0.52
CCDC88B-201ENST00000301897 VSIG8P0DPA2 414 aa11.81□□□□□ -0.52
CCDC88B-201ENST00000301897 KRTAP10-11P60412 298 aa11.81□□□□□ -0.52
CCDC88B-201ENST00000301897 CBX1P83916 185 aa11.81□□□□□ -0.52
CCDC88B-201ENST00000301897 MFGE8Q08431 387 aaPredicted RBP11.81□□□□□ -0.52
CCDC88B-201ENST00000301897 TCTEX1D4Q5JR98 221 aa11.81□□□□□ -0.52
CCDC88B-201ENST00000301897 KHDC1LQ5JSQ8 128 aa11.81□□□□□ -0.52
CCDC88B-201ENST00000301897 OR52W1Q6IF63 320 aa11.81□□□□□ -0.52
CCDC88B-201ENST00000301897 Q6ZSR3 168 aa11.81□□□□□ -0.52
CCDC88B-201ENST00000301897 RTN4RL2Q86UN3 420 aa11.81□□□□□ -0.52
CCDC88B-201ENST00000301897 ANGPTL5Q86XS5 388 aa11.81□□□□□ -0.52
CCDC88B-201ENST00000301897 ELMOD2Q8IZ81 293 aa11.81□□□□□ -0.52
CCDC88B-201ENST00000301897 ZNF596Q8TC21 504 aa11.81□□□□□ -0.52
CCDC88B-201ENST00000301897 STMN2Q93045 179 aa11.81□□□□□ -0.52
CCDC88B-201ENST00000301897 CREB3L1Q96BA8 519 aa11.81□□□□□ -0.52
CCDC88B-201ENST00000301897 LRGUKQ96M69 825 aa11.81□□□□□ -0.52
CCDC88B-201ENST00000301897 MCRIP2Q9BUT9 160 aaKnown RBP11.81□□□□□ -0.52
CCDC88B-201ENST00000301897 SLC25A19Q9HC21 320 aa11.81□□□□□ -0.52
CCDC88B-201ENST00000301897 INPP5EQ9NRR6 644 aa11.81□□□□□ -0.52
CCDC88B-201ENST00000301897 R4GMQ9 66 aa11.81□□□□□ -0.52
CCDC88B-201ENST00000301897 OR2F2O95006 317 aa11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 MRPL3P09001 348 aaKnown RBP11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 ANXA8P13928 327 aa11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 CEACAM3P40198 252 aa11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 BDH1Q02338 343 aa11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 EDDM3AQ14507 147 aa11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 SNAPC1Q16533 368 aa11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 ZNF322Q6U7Q0 402 aaPredicted RBP11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 TCF23Q7RTU1 214 aa11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 TMEM179BQ7Z7N9 219 aa11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 BATF2Q8N1L9 274 aa11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 OR14K1Q8NGZ2 314 aa11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 DNAJC9Q8WXX5 260 aa11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 CNN2Q99439 309 aaKnown RBP11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 SLC25A33Q9BSK2 321 aa11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 CHID1Q9BWS9 393 aa11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 PLEKHA1Q9HB21 404 aa11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 OR52A1Q9UKL2 312 aa11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 UBE2J1Q9Y385 318 aaPredicted RBP11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 PCDHGB5Q9Y5G0 923 aa11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 SNX5Q9Y5X3 404 aa11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 STAB2Q8WWQ8 2551 aa11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 RYR3Q15413 4870 aa11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 KIAA2026Q5HYC2 2103 aa11.8□□□□□ -0.52
CCDC88B-201ENST00000301897 A0A1B0GTI1 187 aa11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 FAM230AA0A1W2PPH8 454 aa11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 MEX3AA1L020 520 aaKnown RBP11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 CCDC182A6NF36 153 aa11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 SRSF10O75494 262 aaKnown RBP11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 GATBO75879 557 aaKnown RBP11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 LPLP06858 475 aa11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 JUNBP17275 347 aaPredicted RBP11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 GABRR1P24046 479 aa11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 ERP29P30040 261 aaKnown RBP11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 SLC6A1P30531 599 aa11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 FUT6P51993 359 aa11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 GRK1Q15835 563 aa11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 ABCA11PQ4W5N1 156 aa11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 UNQ9370/PRO34162Q6UXP9 181 aa11.79□□□□□ -0.52
CCDC88B-201ENST00000301897 EGFL6Q8IUX8 553 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms