RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 A0A1B0GW15 77 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 A0A1W2PQD3 144 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 PYCARD-AS1I3L0S3 204 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 KLK3P07288 261 aaPredicted RBP5.73□□□□□ -1.49
VPS35-201ENST00000299138 ALOX5APP20292 161 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 KCNJ3P48549 501 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 DLK1P80370 383 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 OR1L4Q8NGR5 311 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 TNFRSF13CQ96RJ3 184 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 DERL1Q9BUN8 251 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 THAP10Q9P2Z0 257 aaPredicted RBP5.73□□□□□ -1.49
VPS35-201ENST00000299138 CACFD1Q9UGQ2 172 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 KCNK6Q9Y257 313 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 MRPS28Q9Y2Q9 187 aaKnown RBP5.73□□□□□ -1.49
VPS35-201ENST00000299138 LRRC3CA6NJW4 275 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 DIRC3C9JPN6 131 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 PPM1DO15297 605 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 LRP3O75074 770 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 FTH1P19P0C7X4 201 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 ZNF735P0CB33 412 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 SPNS3Q6ZMD2 512 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 GRASPQ7Z6J2 395 aaPredicted RBP5.73□□□□□ -1.49
VPS35-201ENST00000299138 SCCPDHQ8NBX0 429 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 SLC16A11Q8NCK7 471 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 OR10AG1Q8NH19 301 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 PBX4Q9BYU1 374 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 GDE1Q9NZC3 331 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 ZNF391Q9UJN7 358 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 LCTP09848 1927 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 ZNF253O75346 499 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 ONECUT2O95948 504 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 SOD3P08294 240 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 COX6CP09669 75 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 DHRS2Q13268 280 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 C6orf132Q5T0Z8 1188 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 IER5LQ5T953 404 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 LILRA6Q6PI73 481 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 OR4D11Q8NGI4 311 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 OTOSQ8NHW6 89 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 TIMP4Q99727 224 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 ZNF2Q9BSG1 426 aaPredicted RBP5.73□□□□□ -1.49
VPS35-201ENST00000299138 MAGT1Q9H0U3 335 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 SLC17A4Q9Y2C5 497 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 UFC1Q9Y3C8 167 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 B4GALT3O60512 393 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 SMPD2O60906 423 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 DHRS3O75911 302 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 TMEM249Q2WGJ8 235 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 C9orf135Q5VTT2 229 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 C1orf53Q5VUE5 145 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 GKN2Q86XP6 184 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 CBLN2Q8IUK8 224 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 SLC38A9Q8NBW4 561 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 ZNF740Q8NDX6 193 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 WFDC5Q8TCV5 224 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 RNF133Q8WVZ7 376 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 H1FXQ92522 213 aaKnown RBP5.72□□□□□ -1.49
VPS35-201ENST00000299138 ZNF775Q96BV0 537 aaPredicted RBP5.72□□□□□ -1.49
VPS35-201ENST00000299138 NRIP2Q9BQI9 281 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 C19orf25Q9UFG5 118 aaPredicted RBP5.72□□□□□ -1.49
VPS35-201ENST00000299138 TCFL5Q9UL49 500 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 A0A0J9YY10 115 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 UBE2L5PA0A1B0GUS4 154 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 E5RGE8 158 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 CLDN34H7C241 214 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 COX7A2P2O60397 106 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 TNFP01375 233 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 MMP9P14780 707 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 MMP16P51512 607 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 STARD6P59095 220 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 RPS4XP62701 263 aaKnown RBP5.72□□□□□ -1.49
VPS35-201ENST00000299138 LINC00114Q6XXX2 140 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 OR10P1Q8NGE3 313 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 OR52B4Q8NGK2 314 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 OR1L6Q8NGR2 347 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 ZNF519Q8TB69 540 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 SHDQ96IW2 340 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 WDR61Q9GZS3 305 aaKnown RBP5.72□□□□□ -1.49
VPS35-201ENST00000299138 EGLN1Q9GZT9 426 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 FUT9Q9Y231 359 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 NSG2Q9Y328 171 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 INSL6Q9Y581 213 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 GOLGB1Q14789 3259 aaKnown RBP5.72□□□□□ -1.49
VPS35-201ENST00000299138 WDR81Q562E7 1941 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 ZFPL1O95159 310 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 ISG15P05161 165 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 RPS16P62249 146 aaKnown RBP5.72□□□□□ -1.49
VPS35-201ENST00000299138 SRSF5Q13243 272 aaKnown RBP5.72□□□□□ -1.49
VPS35-201ENST00000299138 CCSMST1Q4G0I0 132 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 ACSF3Q4G176 576 aaPredicted RBP5.72□□□□□ -1.49
VPS35-201ENST00000299138 PRAMEF5Q5TYX0 476 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 PRAMEF6Q5VXH4 476 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 ZBP1Q9H171 429 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 FLRT3Q9NZU0 649 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 ZMIZ1Q9ULJ6 1067 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 PTRH2Q9Y3E5 179 aaKnown RBP5.72□□□□□ -1.49
VPS35-201ENST00000299138 ZNF729A6NN14 1252 aaPredicted RBP5.72□□□□□ -1.49
VPS35-201ENST00000299138 CYR61O00622 381 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 CA1P00915 261 aaPredicted RBP5.72□□□□□ -1.49
VPS35-201ENST00000299138 OPN1MWP04001 364 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms