RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 MSL2Q9HCI7 577 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 A0A1B0GTI1 187 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 RNF212BA8MTL3 300 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 GRK1Q15835 563 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 C6orf183Q5T699 404 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 ARL6Q9H0F7 186 aa10.04□□□□□ -0.8
VPS4A-201ENST00000254950 PURGQ9UJV8 347 aaKnown RBP10.04□□□□□ -0.8
VPS4A-201ENST00000254950 DOCK7Q96N67 2140 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 PCNX1Q96RV3 2341 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 DIDO1Q9BTC0 2240 aaKnown RBP10.03□□□□□ -0.8
VPS4A-201ENST00000254950 PRSS44E7EML9 344 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 IFNA7P01567 189 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 KCNJ8Q15842 424 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 AADACL3Q5VUY0 350 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 NOXA1Q86UR1 476 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 TERB2Q8NHR7 220 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 NABP1Q96AH0 204 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 PECRQ9BY49 303 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 POFUT1Q9H488 388 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 RANGRFQ9HD47 186 aaPredicted RBP10.03□□□□□ -0.8
VPS4A-201ENST00000254950 FLVCR2Q9UPI3 526 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 TMA7Q9Y2S6 64 aaKnown RBP10.03□□□□□ -0.8
VPS4A-201ENST00000254950 MED13Q9UHV7 2174 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 PHF3Q92576 2039 aaKnown RBP10.03□□□□□ -0.8
VPS4A-201ENST00000254950 ANKRD20A5PA0PJZ0 165 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 TMEM210A6NLX4 147 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 ABCD4O14678 606 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 FCGR2CP31995 323 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 HIST3H3Q16695 136 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 MICBQ29980 383 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 MPV17LQ2QL34 196 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 PHLDA2Q53GA4 152 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 PXT1Q8NFP0 134 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 SLC25A38Q96DW6 304 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 SPTAN1Q13813 2472 aaKnown RBP10.03□□□□□ -0.8
VPS4A-201ENST00000254950 LRP5LA4QPB2 252 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 SPNP16150 400 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 SRPXP78539 464 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 UBE2V2Q15819 145 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 RPUSD3Q6P087 351 aaKnown RBP10.03□□□□□ -0.8
VPS4A-201ENST00000254950 ENY2Q9NPA8 101 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 ELOVL5Q9NYP7 299 aa10.03□□□□□ -0.8
VPS4A-201ENST00000254950 TMEM30CPA0ZSE6 113 aa10.02□□□□□ -0.8
VPS4A-201ENST00000254950 PPP3CBP16298 524 aa10.02□□□□□ -0.8
VPS4A-201ENST00000254950 CALCRP30988 508 aa10.02□□□□□ -0.8
VPS4A-201ENST00000254950 GLCCI1Q86VQ1 547 aa10.02□□□□□ -0.8
VPS4A-201ENST00000254950 MARCH1Q8TCQ1 289 aa10.02□□□□□ -0.8
VPS4A-201ENST00000254950 SNRNP40Q96DI7 357 aaKnown RBP10.02□□□□□ -0.8
VPS4A-201ENST00000254950 ZNF471Q9BX82 626 aaPredicted RBP10.02□□□□□ -0.8
VPS4A-201ENST00000254950 C1QTNF5Q9BXJ0 243 aa10.02□□□□□ -0.8
VPS4A-201ENST00000254950 CLCF1Q9UBD9 225 aa10.02□□□□□ -0.8
VPS4A-201ENST00000254950 GEMIN2O14893 280 aaKnown RBP10.02□□□□□ -0.81
VPS4A-201ENST00000254950 FOXG1P55316 489 aaPredicted RBP10.02□□□□□ -0.81
VPS4A-201ENST00000254950 ERVK-16P61578 105 aa10.02□□□□□ -0.81
VPS4A-201ENST00000254950 NDUFA5Q16718 116 aa10.02□□□□□ -0.81
VPS4A-201ENST00000254950 MOB1BQ7L9L4 216 aa10.02□□□□□ -0.81
VPS4A-201ENST00000254950 TMEM104Q8NE00 496 aa10.02□□□□□ -0.81
VPS4A-201ENST00000254950 SEH1LQ96EE3 360 aa10.02□□□□□ -0.81
VPS4A-201ENST00000254950 TMEM246Q9BRR3 403 aa10.02□□□□□ -0.81
VPS4A-201ENST00000254950 B3GNT2Q9NY97 397 aa10.02□□□□□ -0.81
VPS4A-201ENST00000254950 A0A0G2JK05 382 aa10.02□□□□□ -0.81
VPS4A-201ENST00000254950 A0A1B0GUH1 482 aa10.02□□□□□ -0.81
VPS4A-201ENST00000254950 hCG_38984A0A1B0GV85 526 aa10.02□□□□□ -0.81
VPS4A-201ENST00000254950 F5H0A9 414 aaPredicted RBP10.02□□□□□ -0.81
VPS4A-201ENST00000254950 NDUFB6O95139 128 aa10.02□□□□□ -0.81
VPS4A-201ENST00000254950 BCL3P20749 454 aa10.02□□□□□ -0.81
VPS4A-201ENST00000254950 BRICD5Q6PL45 260 aa10.02□□□□□ -0.81
VPS4A-201ENST00000254950 TAAR6Q96RI8 345 aa10.02□□□□□ -0.81
VPS4A-201ENST00000254950 SLC23A1Q9UHI7 598 aa10.02□□□□□ -0.81
VPS4A-201ENST00000254950 BPTFQ12830 3046 aa10.02□□□□□ -0.81
VPS4A-201ENST00000254950 MYO7BQ6PIF6 2116 aa10.02□□□□□ -0.81
VPS4A-201ENST00000254950 FAM27E3Q08E93 113 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 RBMXL3Q8N7X1 1067 aaKnown RBP10.01□□□□□ -0.81
VPS4A-201ENST00000254950 KLF14Q8TD94 323 aaPredicted RBP10.01□□□□□ -0.81
VPS4A-201ENST00000254950 POM121L2Q96KW2 1035 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 SOX7Q9BT81 388 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 ZNF230Q9UIE0 474 aaPredicted RBP10.01□□□□□ -0.81
VPS4A-201ENST00000254950 A0A1W2PP11 408 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 ATP6V1G2-DDX39BF2Z307 99 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 FABP7O15540 132 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 RP2O75695 350 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 HLA-DQB1P01920 261 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 CECR9P0C854 216 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 TIMP3P35625 211 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 MRGPRGQ86SM5 289 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 GVQW1Q8N7I0 195 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 GPX8Q8TED1 209 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 LPAR5Q9H1C0 372 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 PPP1R3CQ9UQK1 317 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 V9GYS6 101 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 hCG_1809904A0A1W2PP81 198 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 A0A1W2PPE2 198 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 A0A1W2PR64 198 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 A0A1W2PRV1 198 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 ARPC5O15511 151 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 PHF1O43189 567 aaPredicted RBP10.01□□□□□ -0.81
VPS4A-201ENST00000254950 KIR2DL2P43627 348 aaPredicted RBP10.01□□□□□ -0.81
VPS4A-201ENST00000254950 RAG2P55895 527 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 SLC36A1Q7Z2H8 476 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 LGI3Q8N145 548 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms