RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 MAB21L1Q13394 359 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 DDX39BQ13838 428 aaKnown RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 FAM53BQ14153 422 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 POU6F1Q14863 301 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 RGNQ15493 299 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 TRIP13Q15645 432 aaPredicted RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 EXOC3L4Q17RC7 722 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 EXOC3L2Q2M3D2 409 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 NDUFAF6Q330K2 333 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 COX19Q49B96 90 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 FILIP1LQ4L180 1135 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 ATP6AP1LQ52LC2 224 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 CTSL3PQ5NE16 218 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 BRMS1LQ5PSV4 323 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 VAX1Q5SQQ9 334 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 PHYHD1Q5SRE7 291 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 CCNJQ5T5M9 372 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 KPRPQ5T749 579 aaPredicted RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 C9orf135Q5VTT2 229 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 SLC25A24Q6NUK1 477 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 TRIM40Q6P9F5 258 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 ZNF880Q6PDB4 577 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 DCUN1D2Q6PH85 259 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 TMEM220Q6QAJ8 160 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 IGFL1Q6UW32 110 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 SPESP1Q6UW49 350 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 KDELC1Q6UW63 502 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 ENPP6Q6UWR7 440 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 ZNF836Q6ZNA1 936 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 Q6ZPB1 254 aaPredicted RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 ZNF493Q6ZR52 646 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 Q6ZS92 163 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 LINC00173Q6ZV60 143 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 RPS27LQ71UM5 84 aaKnown RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 NEGR1Q7Z3B1 354 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 VN1R4Q7Z5H5 301 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 LUZP2Q86TE4 346 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 CALHM3Q86XJ0 350 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 TGIF2LXQ8IUE1 241 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 PIANPQ8IYJ0 282 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 CPNE9Q8IYJ1 553 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 ZNF679Q8IYX0 411 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 ZNF567Q8N184 647 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 CYP4Z2PQ8N1L4 340 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 ARHGAP18Q8N392 663 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 TMEM251Q8N6I4 163 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 TPRX1Q8N7U7 411 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 GPATCH11Q8N954 259 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 DNAAF3Q8N9W5 541 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 GATSQ8NAP1 163 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 ST6GALNAC3Q8NDV1 305 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 CCDC112Q8NEF3 446 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 OR11G2Q8NGC1 345 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 OR4E2Q8NGC2 313 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 OR4K2Q8NGD2 314 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 OR5D13Q8NGL4 314 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 OR52P1PQ8NH57 321 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 CDC26Q8NHZ8 85 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 RAB3IL1Q8TBN0 382 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 CD300LFQ8TDQ1 290 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 LRRC29Q8WV35 223 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 SKA2Q8WVK7 121 aaPredicted RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 PIH1D2Q8WWB5 315 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 C22orf15Q8WYQ4 148 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 ELMO1Q92556 727 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 N4BP2L2Q92802 583 aaPredicted RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 NTAN1Q96AB6 310 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 C10orf35Q96D05 121 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 RMI2Q96E14 147 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 L3HYPDHQ96EM0 354 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 PIK3IP1Q96FE7 263 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 RMND5BQ96G75 393 aaPredicted RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 OR10C1Q96KK4 312 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 JSRP1Q96MG2 331 aaPredicted RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 ZNF396Q96N95 335 aaPredicted RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 OXGR1Q96P68 337 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 MS4A4EQ96PG1 132 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 TSSK3Q96PN8 268 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 QKIQ96PU8 341 aaKnown RBP eCLIP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 RNF157Q96PX1 679 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 OR2A5Q96R48 311 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 OR8B4Q96RC9 309 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 TRIB3Q96RU7 358 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 HBEGFQ99075 208 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 CCT7Q99832 543 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 ERP44Q9BS26 406 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 TRIM62Q9BVG3 475 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 TMEM59Q9BXS4 323 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 PLA2G12AQ9BZM1 189 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 RAB33BQ9H082 229 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 VCX2Q9H322 139 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 OR51B6Q9H340 312 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 EXO5Q9H790 373 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 RPF2Q9H7B2 306 aaKnown RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 TMEM185BQ9H7F4 350 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 YY1AP1Q9H869 796 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 CYP3A43Q9HB55 503 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 NTN4Q9HB63 628 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 FBXO6Q9NRD1 293 aaPredicted RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 ZNF355PQ9NSJ1 428 aa0.63□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms