RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 GNG3P63215 75 aa13.61□□□□□ -0.23
CPSF1-213ENST00000620219 FAM27E3Q08E93 113 aa13.61□□□□□ -0.23
CPSF1-213ENST00000620219 C6orf183Q5T699 404 aa13.61□□□□□ -0.23
CPSF1-213ENST00000620219 DEDD2Q8WXF8 326 aa13.61□□□□□ -0.23
CPSF1-213ENST00000620219 POFUT1Q9H488 388 aa13.61□□□□□ -0.23
CPSF1-213ENST00000620219 SCPEP1Q9HB40 452 aa13.61□□□□□ -0.23
CPSF1-213ENST00000620219 FBXO9Q9UK97 447 aaPredicted RBP13.61□□□□□ -0.23
CPSF1-213ENST00000620219 ADAMTS20P59510 1910 aa13.61□□□□□ -0.23
CPSF1-213ENST00000620219 IGKV3D-15A0A087WSY6 115 aa13.61□□□□□ -0.23
CPSF1-213ENST00000620219 CDIPTO14735 213 aa13.61□□□□□ -0.23
CPSF1-213ENST00000620219 DEGS1O15121 323 aa13.61□□□□□ -0.23
CPSF1-213ENST00000620219 KRTCAP3Q53RY4 240 aa13.61□□□□□ -0.23
CPSF1-213ENST00000620219 Q6ZT83 130 aa13.61□□□□□ -0.23
CPSF1-213ENST00000620219 CMTM3Q96MX0 182 aa13.61□□□□□ -0.23
CPSF1-213ENST00000620219 RNF122Q9H9V4 155 aa13.61□□□□□ -0.23
CPSF1-213ENST00000620219 TRAPPC2LQ9UL33 140 aa13.61□□□□□ -0.23
CPSF1-213ENST00000620219 BTG1P62324 171 aa13.6□□□□□ -0.23
CPSF1-213ENST00000620219 MARCH1Q8TCQ1 289 aa13.6□□□□□ -0.23
CPSF1-213ENST00000620219 TMPRSS13Q9BYE2 586 aa13.6□□□□□ -0.23
CPSF1-213ENST00000620219 NPAP1Q9NZP6 1156 aa13.6□□□□□ -0.23
CPSF1-213ENST00000620219 ERP29P30040 261 aaKnown RBP13.6□□□□□ -0.23
CPSF1-213ENST00000620219 CHST6Q9GZX3 395 aa13.6□□□□□ -0.23
CPSF1-213ENST00000620219 ZNF286AQ9HBT8 521 aa13.6□□□□□ -0.23
CPSF1-213ENST00000620219 OSGIN2Q9Y236 505 aa13.6□□□□□ -0.23
CPSF1-213ENST00000620219 DIRAS3O95661 229 aa13.6□□□□□ -0.23
CPSF1-213ENST00000620219 IRF2P14316 349 aa13.6□□□□□ -0.23
CPSF1-213ENST00000620219 BTCP35070 178 aa13.6□□□□□ -0.23
CPSF1-213ENST00000620219 TBR1Q16650 682 aa13.6□□□□□ -0.23
CPSF1-213ENST00000620219 IGKV1-9A0A0C4DH69 117 aa13.6□□□□□ -0.23
CPSF1-213ENST00000620219 UCNP55089 124 aa13.6□□□□□ -0.23
CPSF1-213ENST00000620219 UNC119Q13432 240 aa13.6□□□□□ -0.23
CPSF1-213ENST00000620219 TFAP2EQ6VUC0 442 aa13.6□□□□□ -0.23
CPSF1-213ENST00000620219 SECTM1Q8WVN6 248 aa13.6□□□□□ -0.23
CPSF1-213ENST00000620219 HOXB5P09067 269 aa13.59□□□□□ -0.23
CPSF1-213ENST00000620219 ZNF35P13682 527 aa13.59□□□□□ -0.23
CPSF1-213ENST00000620219 ZNF133P52736 654 aaPredicted RBP13.59□□□□□ -0.23
CPSF1-213ENST00000620219 HGFACQ04756 655 aa13.59□□□□□ -0.23
CPSF1-213ENST00000620219 MEX3BQ6ZN04 569 aaKnown RBP13.59□□□□□ -0.23
CPSF1-213ENST00000620219 CCDC54Q8NEL0 328 aa13.59□□□□□ -0.23
CPSF1-213ENST00000620219 DPCDQ9BVM2 203 aaPredicted RBP13.59□□□□□ -0.23
CPSF1-213ENST00000620219 DNTTIP1Q9H147 329 aa13.59□□□□□ -0.23
CPSF1-213ENST00000620219 GHRLQ9UBU3 117 aa13.59□□□□□ -0.23
CPSF1-213ENST00000620219 SLC33A1O00400 549 aaPredicted RBP13.59□□□□□ -0.23
CPSF1-213ENST00000620219 ARPC5O15511 151 aa13.59□□□□□ -0.23
CPSF1-213ENST00000620219 GSTZ1O43708 216 aaPredicted RBP13.59□□□□□ -0.23
CPSF1-213ENST00000620219 PPA1Q15181 289 aa13.59□□□□□ -0.23
CPSF1-213ENST00000620219 PHLDA2Q53GA4 152 aa13.59□□□□□ -0.23
CPSF1-213ENST00000620219 PRR30Q53SZ7 412 aaPredicted RBP13.59□□□□□ -0.23
CPSF1-213ENST00000620219 INO80CQ6PI98 192 aaPredicted RBP13.59□□□□□ -0.23
CPSF1-213ENST00000620219 OR11H7Q8NGC8 314 aa13.59□□□□□ -0.23
CPSF1-213ENST00000620219 ZCCHC14Q8WYQ9 949 aaKnown RBP13.59□□□□□ -0.23
CPSF1-213ENST00000620219 RND1Q92730 232 aa13.59□□□□□ -0.23
CPSF1-213ENST00000620219 LRRC46Q96FV0 321 aa13.59□□□□□ -0.23
CPSF1-213ENST00000620219 LPAR5Q9H1C0 372 aa13.59□□□□□ -0.23
CPSF1-213ENST00000620219 FRYQ5TBA9 3013 aa13.59□□□□□ -0.23
CPSF1-213ENST00000620219 IL18BPO95998 194 aa13.59□□□□□ -0.23
CPSF1-213ENST00000620219 BCL3P20749 454 aa13.59□□□□□ -0.23
CPSF1-213ENST00000620219 UCP2P55851 309 aa13.59□□□□□ -0.23
CPSF1-213ENST00000620219 PDZK1IP1Q13113 114 aa13.59□□□□□ -0.23
CPSF1-213ENST00000620219 LY6DQ14210 128 aa13.59□□□□□ -0.23
CPSF1-213ENST00000620219 C1orf100Q5SVJ3 147 aa13.59□□□□□ -0.23
CPSF1-213ENST00000620219 C12orf45Q8N5I9 185 aaPredicted RBP13.59□□□□□ -0.23
CPSF1-213ENST00000620219 RBMXL3Q8N7X1 1067 aaKnown RBP13.59□□□□□ -0.23
CPSF1-213ENST00000620219 PRR7Q8TB68 274 aa13.59□□□□□ -0.23
CPSF1-213ENST00000620219 BCL2L2Q92843 193 aaPredicted RBP13.59□□□□□ -0.23
CPSF1-213ENST00000620219 NINJ1Q92982 152 aa13.59□□□□□ -0.23
CPSF1-213ENST00000620219 S100PBPQ96BU1 408 aa13.59□□□□□ -0.23
CPSF1-213ENST00000620219 RAB27BO00194 218 aa13.58□□□□□ -0.23
CPSF1-213ENST00000620219 GLRA1P23415 457 aa13.58□□□□□ -0.23
CPSF1-213ENST00000620219 RAB14P61106 215 aa13.58□□□□□ -0.23
CPSF1-213ENST00000620219 PAQR4Q8N4S7 273 aaPredicted RBP13.58□□□□□ -0.23
CPSF1-213ENST00000620219 SNAPC3Q92966 411 aa13.58□□□□□ -0.23
CPSF1-213ENST00000620219 CYYR1Q96J86 154 aa13.58□□□□□ -0.23
CPSF1-213ENST00000620219 GPR137Q96N19 417 aa13.58□□□□□ -0.23
CPSF1-213ENST00000620219 TRAV39A0A0B4J263 110 aa13.58□□□□□ -0.24
CPSF1-213ENST00000620219 GSTP1P09211 210 aaKnown RBP13.58□□□□□ -0.24
CPSF1-213ENST00000620219 TAS2R46P59540 309 aa13.58□□□□□ -0.24
CPSF1-213ENST00000620219 RPS4Y2Q8TD47 263 aa13.58□□□□□ -0.24
CPSF1-213ENST00000620219 NHLRC1Q6VVB1 395 aa13.58□□□□□ -0.24
CPSF1-213ENST00000620219 Q6ZS92 163 aa13.58□□□□□ -0.24
CPSF1-213ENST00000620219 DPPA2Q7Z7J5 298 aa13.58□□□□□ -0.24
CPSF1-213ENST00000620219 BIVMQ86UB2 503 aa13.58□□□□□ -0.24
CPSF1-213ENST00000620219 OR8H3Q8N146 312 aa13.58□□□□□ -0.24
CPSF1-213ENST00000620219 SNRNP40Q96DI7 357 aaKnown RBP13.58□□□□□ -0.24
CPSF1-213ENST00000620219 ZNF2Q9BSG1 426 aaPredicted RBP13.58□□□□□ -0.24
CPSF1-213ENST00000620219 KCNIP3Q9Y2W7 256 aa13.58□□□□□ -0.24
CPSF1-213ENST00000620219 MSRB2Q9Y3D2 182 aa13.58□□□□□ -0.24
CPSF1-213ENST00000620219 CCL21O00585 134 aa13.58□□□□□ -0.24
CPSF1-213ENST00000620219 CTDSPLO15194 276 aa13.58□□□□□ -0.24
CPSF1-213ENST00000620219 PRAF2O60831 178 aa13.58□□□□□ -0.24
CPSF1-213ENST00000620219 CNOT4O95628 575 aaKnown RBP13.58□□□□□ -0.24
CPSF1-213ENST00000620219 IGFBP3P17936 291 aaPredicted RBP13.58□□□□□ -0.24
CPSF1-213ENST00000620219 RAB6AP20340 208 aa13.58□□□□□ -0.24
CPSF1-213ENST00000620219 GNRHRP30968 328 aa13.58□□□□□ -0.24
CPSF1-213ENST00000620219 KIR2DL2P43627 348 aaPredicted RBP13.58□□□□□ -0.24
CPSF1-213ENST00000620219 OR2W3Q7Z3T1 314 aa13.58□□□□□ -0.24
CPSF1-213ENST00000620219 ELMOD3Q96FG2 381 aa13.58□□□□□ -0.24
CPSF1-213ENST00000620219 HYLS1Q96M11 299 aa13.58□□□□□ -0.24
CPSF1-213ENST00000620219 C4BPBP20851 252 aa13.57□□□□□ -0.24
CPSF1-213ENST00000620219 CBX5P45973 191 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms