RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 LRRC28Q86X40 367 aaPredicted RBP16.52■□□□□ 0.24
UPF3A-211ENST00000618700 MKXQ8IYA7 352 aa16.52■□□□□ 0.24
UPF3A-211ENST00000618700 SAXO1Q8IYX7 474 aa16.52■□□□□ 0.24
UPF3A-211ENST00000618700 ZSCAN4Q8NAM6 433 aaPredicted RBP16.52■□□□□ 0.24
UPF3A-211ENST00000618700 SLAMF9Q96A28 289 aa16.52■□□□□ 0.24
UPF3A-211ENST00000618700 CEP19Q96LK0 163 aa16.52■□□□□ 0.24
UPF3A-211ENST00000618700 ZNF488Q96MN9 340 aa16.52■□□□□ 0.24
UPF3A-211ENST00000618700 GFI1Q99684 422 aa16.52■□□□□ 0.24
UPF3A-211ENST00000618700 FUNDC2Q9BWH2 189 aa16.52■□□□□ 0.24
UPF3A-211ENST00000618700 WDR13Q9H1Z4 485 aa16.52■□□□□ 0.24
UPF3A-211ENST00000618700 HES4Q9HCC6 221 aa16.52■□□□□ 0.24
UPF3A-211ENST00000618700 SCOCQ9UIL1 159 aa16.52■□□□□ 0.24
UPF3A-211ENST00000618700 PPIAL4AQ9Y536 164 aa16.52■□□□□ 0.24
UPF3A-211ENST00000618700 FLNAP21333 2647 aaKnown RBP16.51■□□□□ 0.23
UPF3A-211ENST00000618700 IGHV4-61A0A0C4DH41 118 aa16.51■□□□□ 0.23
UPF3A-211ENST00000618700 OOEPA6NGQ2 149 aa16.51■□□□□ 0.23
UPF3A-211ENST00000618700 SPRY1O43609 319 aaPredicted RBP16.51■□□□□ 0.23
UPF3A-211ENST00000618700 ANGPTL7O43827 346 aa16.51■□□□□ 0.23
UPF3A-211ENST00000618700 MYL9P24844 172 aa16.51■□□□□ 0.23
UPF3A-211ENST00000618700 MDH2P40926 338 aaKnown RBP16.51■□□□□ 0.23
UPF3A-211ENST00000618700 RPL5P46777 297 aaKnown RBP16.51■□□□□ 0.23
UPF3A-211ENST00000618700 ZNF404Q494X3 552 aa16.51■□□□□ 0.23
UPF3A-211ENST00000618700 TMEM155Q4W5P6 130 aa16.51■□□□□ 0.23
UPF3A-211ENST00000618700 SPNS3Q6ZMD2 512 aa16.51■□□□□ 0.23
UPF3A-211ENST00000618700 FAM90A1Q86YD7 464 aa16.51■□□□□ 0.23
UPF3A-211ENST00000618700 JAGN1Q8N5M9 183 aa16.51■□□□□ 0.23
UPF3A-211ENST00000618700 BOLLQ8N9W6 283 aaKnown RBP16.51■□□□□ 0.23
UPF3A-211ENST00000618700 C19orf18Q8NEA5 215 aa16.51■□□□□ 0.23
UPF3A-211ENST00000618700 PXT1Q8NFP0 134 aa16.51■□□□□ 0.23
UPF3A-211ENST00000618700 TNFAIP8L1Q8WVP5 186 aa16.51■□□□□ 0.23
UPF3A-211ENST00000618700 SEH1LQ96EE3 360 aa16.51■□□□□ 0.23
UPF3A-211ENST00000618700 GPER1Q99527 375 aa16.51■□□□□ 0.23
UPF3A-211ENST00000618700 UQCC2Q9BRT2 126 aa16.51■□□□□ 0.23
UPF3A-211ENST00000618700 CENPOQ9BU64 300 aa16.51■□□□□ 0.23
UPF3A-211ENST00000618700 TMEM165Q9HC07 324 aa16.51■□□□□ 0.23
UPF3A-211ENST00000618700 RASL12Q9NYN1 266 aa16.51■□□□□ 0.23
UPF3A-211ENST00000618700 GSTK1Q9Y2Q3 226 aa16.51■□□□□ 0.23
UPF3A-211ENST00000618700 CELSR1Q9NYQ6 3014 aa16.51■□□□□ 0.23
UPF3A-211ENST00000618700 ZNF469Q96JG9 3925 aaPredicted RBP16.5■□□□□ 0.23
UPF3A-211ENST00000618700 LOC100506127A0A0U1RQW1 187 aa16.5■□□□□ 0.23
UPF3A-211ENST00000618700 AIREO43918 545 aa16.5■□□□□ 0.23
UPF3A-211ENST00000618700 KDM4BO94953 1096 aa16.5■□□□□ 0.23
UPF3A-211ENST00000618700 TMEM225BP0DP42 221 aa16.5■□□□□ 0.23
UPF3A-211ENST00000618700 PTGFRP43088 359 aa16.5■□□□□ 0.23
UPF3A-211ENST00000618700 ASCL4Q6XD76 172 aa16.5■□□□□ 0.23
UPF3A-211ENST00000618700 ACP7Q6ZNF0 438 aa16.5■□□□□ 0.23
UPF3A-211ENST00000618700 C1QL2Q7Z5L3 287 aa16.5■□□□□ 0.23
UPF3A-211ENST00000618700 MUC20Q8N307 709 aaPredicted RBP16.5■□□□□ 0.23
UPF3A-211ENST00000618700 PNLDC1Q8NA58 520 aaKnown RBP16.5■□□□□ 0.23
UPF3A-211ENST00000618700 REG4Q9BYZ8 158 aa16.5■□□□□ 0.23
UPF3A-211ENST00000618700 RNF167Q9H6Y7 350 aa16.5■□□□□ 0.23
UPF3A-211ENST00000618700 CNTD2Q9H8S5 307 aa16.5■□□□□ 0.23
UPF3A-211ENST00000618700 TRAV38-1A0A0B4J264 116 aa16.49■□□□□ 0.23
UPF3A-211ENST00000618700 ISPDA4D126 451 aa16.49■□□□□ 0.23
UPF3A-211ENST00000618700 F8VVB4 439 aa16.49■□□□□ 0.23
UPF3A-211ENST00000618700 F8VWA3 439 aa16.49■□□□□ 0.23
UPF3A-211ENST00000618700 CYB5AP00167 134 aa16.49■□□□□ 0.23
UPF3A-211ENST00000618700 MUC1P15941 1255 aaPredicted RBP16.49■□□□□ 0.23
UPF3A-211ENST00000618700 GLRA1P23415 457 aa16.49■□□□□ 0.23
UPF3A-211ENST00000618700 NPBWR2P48146 333 aa16.49■□□□□ 0.23
UPF3A-211ENST00000618700 MTNR1BP49286 362 aa16.49■□□□□ 0.23
UPF3A-211ENST00000618700 C1orf100Q5SVJ3 147 aa16.49■□□□□ 0.23
UPF3A-211ENST00000618700 GLT8D1Q68CQ7 371 aa16.49■□□□□ 0.23
UPF3A-211ENST00000618700 STUMQ69YW2 141 aa16.49■□□□□ 0.23
UPF3A-211ENST00000618700 SFRP4Q6FHJ7 346 aaPredicted RBP16.49■□□□□ 0.23
UPF3A-211ENST00000618700 SLC16A12Q6ZSM3 486 aa16.49■□□□□ 0.23
UPF3A-211ENST00000618700 GPR141Q7Z602 305 aa16.49■□□□□ 0.23
UPF3A-211ENST00000618700 Q8IYB0 196 aa16.49■□□□□ 0.23
UPF3A-211ENST00000618700 OR4D6Q8NGJ1 314 aa16.49■□□□□ 0.23
UPF3A-211ENST00000618700 OR51F2Q8NH61 342 aa16.49■□□□□ 0.23
UPF3A-211ENST00000618700 CLDND2Q8NHS1 167 aa16.49■□□□□ 0.23
UPF3A-211ENST00000618700 C12orf43Q96C57 262 aaKnown RBP16.49■□□□□ 0.23
UPF3A-211ENST00000618700 FOXRED1Q96CU9 486 aaPredicted RBP16.49■□□□□ 0.23
UPF3A-211ENST00000618700 KCTD7Q96MP8 289 aa16.49■□□□□ 0.23
UPF3A-211ENST00000618700 TMEM246Q9BRR3 403 aa16.49■□□□□ 0.23
UPF3A-211ENST00000618700 SMURF1Q9HCE7 757 aa16.49■□□□□ 0.23
UPF3A-211ENST00000618700 IL36GQ9NZH8 169 aa16.49■□□□□ 0.23
UPF3A-211ENST00000618700 IGHV3OR15-7A0A075B7D8 119 aa16.48■□□□□ 0.23
UPF3A-211ENST00000618700 TRAPPC2LH3BP13 241 aa16.48■□□□□ 0.23
UPF3A-211ENST00000618700 TNFRSF13BO14836 293 aaPredicted RBP16.48■□□□□ 0.23
UPF3A-211ENST00000618700 NXPH2O95156 264 aa16.48■□□□□ 0.23
UPF3A-211ENST00000618700 SFTPBP07988 381 aa16.48■□□□□ 0.23
UPF3A-211ENST00000618700 BCL3P20749 454 aa16.48■□□□□ 0.23
UPF3A-211ENST00000618700 USF1P22415 310 aaPredicted RBP16.48■□□□□ 0.23
UPF3A-211ENST00000618700 GMFBP60983 142 aa16.48■□□□□ 0.23
UPF3A-211ENST00000618700 LOXL1Q08397 574 aaPredicted RBP16.48■□□□□ 0.23
UPF3A-211ENST00000618700 MICBQ29980 383 aa16.48■□□□□ 0.23
UPF3A-211ENST00000618700 SMIM21Q3B7S5 101 aa16.48■□□□□ 0.23
UPF3A-211ENST00000618700 ANKRD13BQ86YJ7 626 aa16.48■□□□□ 0.23
UPF3A-211ENST00000618700 BATF2Q8N1L9 274 aa16.48■□□□□ 0.23
UPF3A-211ENST00000618700 SPICQ8N5J4 248 aa16.48■□□□□ 0.23
UPF3A-211ENST00000618700 DEFB108BQ8NET1 73 aa16.48■□□□□ 0.23
UPF3A-211ENST00000618700 GAL3ST1Q99999 423 aa16.48■□□□□ 0.23
UPF3A-211ENST00000618700 FAM192AQ9GZU8 254 aa16.48■□□□□ 0.23
UPF3A-211ENST00000618700 RHOFQ9HBH0 211 aa16.48■□□□□ 0.23
UPF3A-211ENST00000618700 RBFOX1Q9NWB1 397 aaKnown RBP16.48■□□□□ 0.23
UPF3A-211ENST00000618700 NLKQ9UBE8 527 aa16.48■□□□□ 0.23
UPF3A-211ENST00000618700 AK6Q9Y3D8 172 aaKnown RBP16.48■□□□□ 0.23
UPF3A-211ENST00000618700 CEACAM18A8MTB9 384 aa16.47■□□□□ 0.23
UPF3A-211ENST00000618700 PDCD5O14737 125 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms