RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 TUBAL3A6NHL2 446 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 ZSCAN5BA6NJL1 495 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 F5H5P2 479 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 ORC5O43913 435 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 RHBDL1O75783 438 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 SCGNO76038 276 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 MELTFP08582 738 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 BCL3P20749 454 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 LOXP28300 417 aaPredicted RBP12.12□□□□□ -0.47
USP39-220ENST00000613444 ASAH1Q13510 395 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 OXA1LQ15070 435 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 ADIPOQQ15848 244 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 SIGIRRQ6IA17 410 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 C11orf53Q8IXP5 236 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 POC5Q8NA72 575 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 SCCPDHQ8NBX0 429 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 OR51T1Q8NGJ9 327 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 SETD6Q8TBK2 473 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 MRPS24Q96EL2 167 aaKnown RBP12.12□□□□□ -0.47
USP39-220ENST00000613444 ZNF581Q9P0T4 197 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 KLK11Q9UBX7 282 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 CACNA1DQ01668 2161 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 TMEM210A6NLX4 147 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 J3QT63 122 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 CSTBP04080 98 aaKnown RBP12.11□□□□□ -0.47
USP39-220ENST00000613444 GUCA2AQ02747 115 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 FAM189A2Q15884 450 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 MKXQ8IYA7 352 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 FBXL14Q8N1E6 418 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 OSR2Q8N2R0 312 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 OR56B1Q8NGI3 324 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 TLNRD1Q9H1K6 362 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 CXXC4Q9H2H0 198 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 RBFOX1Q9NWB1 397 aaKnown RBP12.11□□□□□ -0.47
USP39-220ENST00000613444 ATP23Q9Y6H3 246 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 ARFGEF3Q5TH69 2177 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 USP9XQ93008 2570 aaPredicted RBP12.11□□□□□ -0.47
USP39-220ENST00000613444 HRNRQ86YZ3 2850 aaPredicted RBP12.11□□□□□ -0.47
USP39-220ENST00000613444 TMEM235A6NFC5 223 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 DEFB108AA8MXU0 73 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 AKR7A2O43488 359 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 GNB3P16520 340 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 CPT2P23786 658 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 SRP9P49458 86 aaKnown RBP12.11□□□□□ -0.47
USP39-220ENST00000613444 PIGYQ3MUY2 71 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 CDNFQ49AH0 187 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 BATF2Q8N1L9 274 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 SPERTQ8NA61 448 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 GPX8Q8TED1 209 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 FCAMRQ8WWV6 532 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 SEH1LQ96EE3 360 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 TAAR3PQ9P1P4 343 aa12.11□□□□□ -0.47
USP39-220ENST00000613444 IGHV3-64DA0A0J9YX35 117 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 A0A1B0GVG6 124 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 LINC00854A0A1B0GVQ3 168 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 E7EQL1 145 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 C3orf80F5H4A9 247 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 H7C417 338 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 MFNGO00587 321 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 SSX4O60224 188 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 PTBP3O95758 552 aaKnown RBP12.1□□□□□ -0.47
USP39-220ENST00000613444 HIST1H1DP16402 221 aaKnown RBP12.1□□□□□ -0.47
USP39-220ENST00000613444 PRSS3P35030 304 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 GDNFP39905 211 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 RFX2P48378 723 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 RBM11P57052 281 aaKnown RBP12.1□□□□□ -0.47
USP39-220ENST00000613444 TAF9Q16594 264 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 BEX5Q5H9J7 111 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 HACD4Q5VWC8 232 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 OLFML2AQ68BL7 652 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 DCDC5Q6ZRR9 648 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 Q6ZTK2 550 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 CENPSQ8N2Z9 138 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 CHST4Q8NCG5 386 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 C19orf18Q8NEA5 215 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 NEUROG1Q92886 237 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 RAB3CQ96E17 227 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 ARHGAP5-AS1Q96IT6 56 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 ZNF488Q96MN9 340 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 C11orf54Q9H0W9 315 aaPredicted RBP12.1□□□□□ -0.47
USP39-220ENST00000613444 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.1□□□□□ -0.47
USP39-220ENST00000613444 MTFP1Q9UDX5 166 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 MYO18BQ8IUG5 2567 aa12.1□□□□□ -0.47
USP39-220ENST00000613444 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.09□□□□□ -0.47
USP39-220ENST00000613444 CDIPTO14735 213 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 GEMIN2O14893 280 aaKnown RBP12.09□□□□□ -0.47
USP39-220ENST00000613444 PLAUP00749 431 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 OR4A8P0C604 315 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 DEFA1P59665 94 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 DEFA3P59666 94 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 FGF12P61328 243 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 ERVK11-1P61568 191 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 KLF9Q13886 244 aaPredicted RBP12.09□□□□□ -0.47
USP39-220ENST00000613444 NHLRC3Q5JS37 347 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 GDPD3Q7L5L3 318 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 OR2Z1Q8NG97 314 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 LILRB1Q8NHL6 650 aaPredicted RBP12.09□□□□□ -0.47
USP39-220ENST00000613444 PCDHB16Q9NRJ7 776 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 ST3GAL6Q9Y274 331 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 CHD6Q8TD26 2715 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms