RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 ANXA3P12429 323 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 CPMP14384 443 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 H2AFXP16104 143 aaPredicted RBP3.39□□□□□ -1.87
LINC00540-201ENST00000611481 ACADSP16219 412 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 ZNF14P17017 642 aaPredicted RBP3.39□□□□□ -1.87
LINC00540-201ENST00000611481 HPCAL1P37235 193 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 RPL13AP40429 203 aaKnown RBP3.39□□□□□ -1.87
LINC00540-201ENST00000611481 P2RY1P47900 373 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 FHITP49789 147 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 EMDP50402 254 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 XKP51811 444 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 FOXA1P55317 472 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 CSNK2BP67870 215 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 PAX2Q02962 417 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 DUSP5Q16690 384 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 LCN1P1Q5VSP4 162 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 STEAP1BQ6NZ63 245 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 CASP12Q6UXS9 341 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 NPSR1Q6W5P4 371 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 TMEM219Q86XT9 240 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 ZNF101Q8IZC7 436 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 CLEC4FQ8N1N0 589 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 SPICQ8N5J4 248 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 GVQW1Q8N7I0 195 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 OR2T12Q8NG77 320 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 OR10A7Q8NGE5 316 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 RHEBL1Q8TAI7 183 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 ZNF596Q8TC21 504 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 ACMSDQ8TDX5 336 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 ZFP90Q8TF47 636 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 MAIP1Q8WWC4 291 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 NSL1Q96IY1 281 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 C17orf77Q96MU5 243 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 ZNF385AQ96PM9 386 aaKnown RBP3.39□□□□□ -1.87
LINC00540-201ENST00000611481 NEDD4LQ96PU5 975 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 IL4I1Q96RQ9 567 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 GPR21Q99679 349 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 RBBP8Q99708 897 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 MCRIP2Q9BUT9 160 aaKnown RBP3.39□□□□□ -1.87
LINC00540-201ENST00000611481 ZNF717Q9BY31 904 aaPredicted RBP3.39□□□□□ -1.87
LINC00540-201ENST00000611481 TBL1XR1Q9BZK7 514 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 COMMD4Q9H0A8 199 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 GAL3ST2Q9H3Q3 398 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 WDR41Q9HAD4 459 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 MRPL39Q9NYK5 338 aaKnown RBP3.39□□□□□ -1.87
LINC00540-201ENST00000611481 MBD2Q9UBB5 411 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 STARD10Q9Y365 291 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 TIMM10BQ9Y5J6 103 aa3.39□□□□□ -1.87
LINC00540-201ENST00000611481 SRRM2Q9UQ35 2752 aaKnown RBP3.39□□□□□ -1.87
LINC00540-201ENST00000611481 IGHV4OR15-8A0A075B7B6 117 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 IGHV1-69DA0A0B4J2H0 117 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 KIR2DS1A0A191URI9 304 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 A0A1W2PPI3 338 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 CCDC182A6NF36 153 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 SERPINE3A8MV23 424 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 P2RY10O00398 339 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 DLGAP1O14490 977 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 ZNF195O14628 629 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 PFDN6O15212 129 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 STX11O75558 287 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 CDK2AP2O75956 126 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 ECDO95905 644 aaPredicted RBP3.38□□□□□ -1.87
LINC00540-201ENST00000611481 IGHV1-69P01742 117 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 CD1DP15813 335 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 AADACP22760 399 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 EPHA2P29317 976 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 CDKN2BP42772 138 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 FOXF1Q12946 379 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 SRSF9Q13242 221 aaKnown RBP eCLIP3.38□□□□□ -1.87
LINC00540-201ENST00000611481 GPR176Q14439 515 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 CHI3L2Q15782 390 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 TRMT12Q53H54 448 aaKnown RBP3.38□□□□□ -1.87
LINC00540-201ENST00000611481 TSPO2Q5TGU0 170 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 SLX4IPQ5VYV7 408 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 OR52E8Q6IFG1 317 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 PAQR6Q6TCH4 344 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 CCDC121Q6ZUS5 278 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 FOXL2NBQ6ZUU3 175 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 CALHM3Q86XJ0 350 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 PDZD9Q8IXQ8 264 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 GATSQ8NAP1 163 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 DMBX1Q8NFW5 382 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 OR13C9Q8NGT0 318 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 ANGPTL6Q8NI99 470 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 CD200R1Q8TD46 325 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 EEF1AKMT1Q8WVE0 214 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 DLX4Q92988 240 aaPredicted RBP3.38□□□□□ -1.87
LINC00540-201ENST00000611481 DNAJA3Q96EY1 480 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 CERS2Q96G23 380 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 OR5M11Q96RB7 305 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 KLHDC3Q9BQ90 382 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 TM2D3Q9BRN9 247 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 MS4A8Q9BY19 250 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 NANOGQ9H9S0 305 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 SLC25A19Q9HC21 320 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 ZNF224Q9NZL3 707 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 MAT2BQ9NZL9 334 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 TAAR3PQ9P1P4 343 aa3.38□□□□□ -1.87
LINC00540-201ENST00000611481 PRPF19Q9UMS4 504 aaKnown RBP3.38□□□□□ -1.87
LINC00540-201ENST00000611481 DHRS7Q9Y394 339 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms