RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 PPOXP50336 477 aa13.1□□□□□ -0.31
UPF1-206ENST00000598471 EFNB2P52799 333 aa13.1□□□□□ -0.31
UPF1-206ENST00000598471 RPS27AP62979 156 aaKnown RBP13.1□□□□□ -0.31
UPF1-206ENST00000598471 SWI5Q1ZZU3 235 aa13.1□□□□□ -0.31
UPF1-206ENST00000598471 PRAMEF6Q5VXH4 476 aa13.1□□□□□ -0.31
UPF1-206ENST00000598471 SP5Q6BEB4 398 aaPredicted RBP13.1□□□□□ -0.31
UPF1-206ENST00000598471 OSR2Q8N2R0 312 aa13.1□□□□□ -0.31
UPF1-206ENST00000598471 OR4M1Q8NGD0 313 aa13.1□□□□□ -0.31
UPF1-206ENST00000598471 OR10K1Q8NGX5 313 aa13.1□□□□□ -0.31
UPF1-206ENST00000598471 C15orf40Q8WUR7 153 aa13.1□□□□□ -0.31
UPF1-206ENST00000598471 ITLN1Q8WWA0 313 aa13.1□□□□□ -0.31
UPF1-206ENST00000598471 SELENOIQ9C0D9 397 aa13.1□□□□□ -0.31
UPF1-206ENST00000598471 BANF2Q9H503 90 aa13.1□□□□□ -0.31
UPF1-206ENST00000598471 DECR2Q9NUI1 292 aa13.1□□□□□ -0.31
UPF1-206ENST00000598471 PLCE1Q9P212 2302 aa13.1□□□□□ -0.31
UPF1-206ENST00000598471 CTAG2O75638 210 aa13.09□□□□□ -0.31
UPF1-206ENST00000598471 TPPPO94811 219 aa13.09□□□□□ -0.31
UPF1-206ENST00000598471 CHRM2P08172 466 aa13.09□□□□□ -0.31
UPF1-206ENST00000598471 ACAA1P09110 424 aaPredicted RBP13.09□□□□□ -0.31
UPF1-206ENST00000598471 BCL3P20749 454 aa13.09□□□□□ -0.31
UPF1-206ENST00000598471 GATA4P43694 442 aa13.09□□□□□ -0.31
UPF1-206ENST00000598471 PITPNAQ00169 270 aa13.09□□□□□ -0.31
UPF1-206ENST00000598471 TLE4Q04727 773 aa13.09□□□□□ -0.31
UPF1-206ENST00000598471 IL18Q14116 193 aa13.09□□□□□ -0.31
UPF1-206ENST00000598471 MST1LQ2TV78 715 aa13.09□□□□□ -0.31
UPF1-206ENST00000598471 TMEM69Q5SWH9 247 aa13.09□□□□□ -0.31
UPF1-206ENST00000598471 ELP2Q6IA86 826 aa13.09□□□□□ -0.31
UPF1-206ENST00000598471 FIP1L1Q6UN15 594 aaKnown RBP13.09□□□□□ -0.31
UPF1-206ENST00000598471 MFSD4AQ8N468 514 aa13.09□□□□□ -0.31
UPF1-206ENST00000598471 TMEM104Q8NE00 496 aa13.09□□□□□ -0.31
UPF1-206ENST00000598471 OR56B1Q8NGI3 324 aa13.09□□□□□ -0.31
UPF1-206ENST00000598471 OR51T1Q8NGJ9 327 aa13.09□□□□□ -0.31
UPF1-206ENST00000598471 OR11L1Q8NGX0 322 aa13.09□□□□□ -0.31
UPF1-206ENST00000598471 OR10Z1Q8NGY1 313 aa13.09□□□□□ -0.31
UPF1-206ENST00000598471 POM121Q96HA1 1249 aa13.09□□□□□ -0.31
UPF1-206ENST00000598471 LPAR5Q9H1C0 372 aa13.09□□□□□ -0.31
UPF1-206ENST00000598471 UBTD1Q9HAC8 227 aa13.09□□□□□ -0.31
UPF1-206ENST00000598471 UFSP2Q9NUQ7 469 aa13.09□□□□□ -0.31
UPF1-206ENST00000598471 C1orf123Q9NWV4 160 aa13.09□□□□□ -0.31
UPF1-206ENST00000598471 MTCH1Q9NZJ7 389 aa13.09□□□□□ -0.31
UPF1-206ENST00000598471 USP9XQ93008 2570 aaPredicted RBP13.09□□□□□ -0.31
UPF1-206ENST00000598471 FLNCQ14315 2725 aa13.08□□□□□ -0.32
UPF1-206ENST00000598471 ICE1Q9Y2F5 2266 aa13.08□□□□□ -0.32
UPF1-206ENST00000598471 BAHCC1Q9P281 2608 aa13.08□□□□□ -0.32
UPF1-206ENST00000598471 IGHV3-64DA0A0J9YX35 117 aa13.08□□□□□ -0.32
UPF1-206ENST00000598471 A0A1W2PP11 408 aa13.08□□□□□ -0.32
UPF1-206ENST00000598471 H3BUI4 141 aa13.08□□□□□ -0.32
UPF1-206ENST00000598471 NOS1APO75052 506 aaPredicted RBP13.08□□□□□ -0.32
UPF1-206ENST00000598471 INHBBP09529 407 aa13.08□□□□□ -0.32
UPF1-206ENST00000598471 PGA5P0DJD9 388 aa13.08□□□□□ -0.32
UPF1-206ENST00000598471 IRF2P14316 349 aa13.08□□□□□ -0.32
UPF1-206ENST00000598471 CDK2P24941 298 aa13.08□□□□□ -0.32
UPF1-206ENST00000598471 PITPNBP48739 271 aa13.08□□□□□ -0.32
UPF1-206ENST00000598471 FGF12P61328 243 aa13.08□□□□□ -0.32
UPF1-206ENST00000598471 PLA2G7Q13093 441 aa13.08□□□□□ -0.32
UPF1-206ENST00000598471 PYHIN1Q6K0P9 492 aa13.08□□□□□ -0.32
UPF1-206ENST00000598471 DTX2Q86UW9 622 aa13.08□□□□□ -0.32
UPF1-206ENST00000598471 MOGAT3Q86VF5 341 aa13.08□□□□□ -0.32
UPF1-206ENST00000598471 POC1AQ8NBT0 407 aa13.08□□□□□ -0.32
UPF1-206ENST00000598471 Q8NFD4 153 aa13.08□□□□□ -0.32
UPF1-206ENST00000598471 HPS1Q92902 700 aa13.08□□□□□ -0.32
UPF1-206ENST00000598471 EMG1Q92979 244 aaKnown RBP13.08□□□□□ -0.32
UPF1-206ENST00000598471 GAL3ST1Q99999 423 aa13.08□□□□□ -0.32
UPF1-206ENST00000598471 NUDT16L1Q9BRJ7 211 aaKnown RBP13.08□□□□□ -0.32
UPF1-206ENST00000598471 TM2D1Q9BX74 207 aa13.08□□□□□ -0.32
UPF1-206ENST00000598471 SAP30LQ9HAJ7 183 aa13.08□□□□□ -0.32
UPF1-206ENST00000598471 V9GYH0 126 aa13.08□□□□□ -0.32
UPF1-206ENST00000598471 ADGRG4Q8IZF6 3080 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 COL12A1Q99715 3063 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 FAM221AA4D161 298 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 AKR7A2O43488 359 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 XRCC3O43542 346 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 RHBDL1O75783 438 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 NXPH2O95156 264 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 SFTPBP07988 381 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 PRKACAP17612 351 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 CD40LGP29965 261 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 NPBWR2P48146 333 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 VEGFCP49767 419 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 RBM11P57052 281 aaKnown RBP13.07□□□□□ -0.32
UPF1-206ENST00000598471 CCL8P80075 99 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 MPPED2Q15777 294 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 PYDC2Q56P42 97 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 NHLRC3Q5JS37 347 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 WDR82Q6UXN9 313 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 LINC00596Q86U02 117 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 FAM58AQ8N1B3 248 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 LRRC29Q8WV35 223 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 Q96M66 194 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 NRIP2Q9BQI9 281 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 RAB1BQ9H0U4 201 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 RBFOX1Q9NWB1 397 aaKnown RBP13.07□□□□□ -0.32
UPF1-206ENST00000598471 PPP1R3CQ9UQK1 317 aa13.07□□□□□ -0.32
UPF1-206ENST00000598471 FAM90A10PA6NDY2 464 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 FAM90A18PA6NE21 464 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 FAM90A16PA6NEW6 464 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 FAM90A20PA6NIJ5 464 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 FAM90A8PA6NJQ4 464 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 FAM90A7PA6NKC0 464 aa13.06□□□□□ -0.32
UPF1-206ENST00000598471 LRRC30A6NM36 301 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms