RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 GPER1Q99527 375 aa12.62□□□□□ -0.39
TRIM28-207ENST00000597136 PIMREGQ9BSJ6 248 aa12.62□□□□□ -0.39
TRIM28-207ENST00000597136 OR51I2Q9H344 312 aa12.62□□□□□ -0.39
TRIM28-207ENST00000597136 PLGRKTQ9HBL7 147 aa12.62□□□□□ -0.39
TRIM28-207ENST00000597136 UFSP2Q9NUQ7 469 aa12.62□□□□□ -0.39
TRIM28-207ENST00000597136 CCDC59Q9P031 241 aaKnown RBP12.62□□□□□ -0.39
TRIM28-207ENST00000597136 DAPK2Q9UIK4 370 aa12.62□□□□□ -0.39
TRIM28-207ENST00000597136 PPP1R3CQ9UQK1 317 aa12.62□□□□□ -0.39
TRIM28-207ENST00000597136 LRP5LA4QPB2 252 aa12.61□□□□□ -0.39
TRIM28-207ENST00000597136 NDUFS8O00217 210 aa12.61□□□□□ -0.39
TRIM28-207ENST00000597136 GRPP07492 148 aa12.61□□□□□ -0.39
TRIM28-207ENST00000597136 SLC2A2P11168 524 aaPredicted RBP12.61□□□□□ -0.39
TRIM28-207ENST00000597136 TNFRSF1AP19438 455 aa12.61□□□□□ -0.39
TRIM28-207ENST00000597136 PTGFRP43088 359 aa12.61□□□□□ -0.39
TRIM28-207ENST00000597136 HAAOP46952 286 aa12.61□□□□□ -0.39
TRIM28-207ENST00000597136 TMEM33P57088 247 aa12.61□□□□□ -0.39
TRIM28-207ENST00000597136 ZP1P60852 638 aa12.61□□□□□ -0.39
TRIM28-207ENST00000597136 ZNF154Q13106 437 aa12.61□□□□□ -0.39
TRIM28-207ENST00000597136 AVPI1Q5T686 147 aa12.61□□□□□ -0.39
TRIM28-207ENST00000597136 IDNKQ5T6J7 187 aa12.61□□□□□ -0.39
TRIM28-207ENST00000597136 HES5Q5TA89 166 aa12.61□□□□□ -0.39
TRIM28-207ENST00000597136 CALHM1Q8IU99 346 aa12.61□□□□□ -0.39
TRIM28-207ENST00000597136 CELF2-AS1Q8N7Q2 184 aa12.61□□□□□ -0.39
TRIM28-207ENST00000597136 OR4D6Q8NGJ1 314 aa12.61□□□□□ -0.39
TRIM28-207ENST00000597136 OR5D18Q8NGL1 313 aa12.61□□□□□ -0.39
TRIM28-207ENST00000597136 OR6M1Q8NGM8 313 aa12.61□□□□□ -0.39
TRIM28-207ENST00000597136 SLC25A28Q96A46 364 aa12.61□□□□□ -0.39
TRIM28-207ENST00000597136 C18orf12Q96KH6 178 aa12.61□□□□□ -0.39
TRIM28-207ENST00000597136 COX4I2Q96KJ9 171 aa12.61□□□□□ -0.39
TRIM28-207ENST00000597136 C3orf80F5H4A9 247 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 PTBP3O95758 552 aaKnown RBP12.6□□□□□ -0.39
TRIM28-207ENST00000597136 SLC25A16P16260 332 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 HTR2CP28335 458 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 SOX6P35712 828 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 GPR6P46095 362 aaPredicted RBP12.6□□□□□ -0.39
TRIM28-207ENST00000597136 OR3A4PP47883 348 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 SRP9P49458 86 aaKnown RBP12.6□□□□□ -0.39
TRIM28-207ENST00000597136 PDZK1IP1Q13113 114 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 RAB11BQ15907 218 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 FAM201AQ5SY85 155 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 ZNF826PQ6ZT77 177 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 C11orf53Q8IXP5 236 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 PNLDC1Q8NA58 520 aaKnown RBP12.6□□□□□ -0.39
TRIM28-207ENST00000597136 SCCPDHQ8NBX0 429 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 TNFAIP8L1Q8WVP5 186 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 SLIRPQ9GZT3 109 aaKnown RBP12.6□□□□□ -0.39
TRIM28-207ENST00000597136 TLNRD1Q9H1K6 362 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 GSX1Q9H4S2 264 aaPredicted RBP12.6□□□□□ -0.39
TRIM28-207ENST00000597136 NARFLQ9H6Q4 476 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 TMEM106BQ9NUM4 274 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 STEAP1Q9UHE8 339 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 A0A0B4J203 849 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 ZNF205O95201 554 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 CYB5R3P00387 301 aaPredicted RBP12.6□□□□□ -0.39
TRIM28-207ENST00000597136 PLATP00750 562 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 INHBBP09529 407 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 TMEM225BP0DP42 221 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 USF1P22415 310 aaPredicted RBP12.6□□□□□ -0.39
TRIM28-207ENST00000597136 IL2RGP31785 369 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 POU3F4P49335 361 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 CLDN12P56749 244 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 P2RY14Q15391 338 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 DGUOKQ16854 277 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 HAGHLQ6PII5 290 aaPredicted RBP12.6□□□□□ -0.39
TRIM28-207ENST00000597136 C1QL2Q7Z5L3 287 aa12.6□□□□□ -0.39
TRIM28-207ENST00000597136 MRPS28Q9Y2Q9 187 aaKnown RBP12.6□□□□□ -0.39
TRIM28-207ENST00000597136 HIVEP2P31629 2446 aa12.59□□□□□ -0.39
TRIM28-207ENST00000597136 DSCAML1Q8TD84 2053 aa12.59□□□□□ -0.39
TRIM28-207ENST00000597136 J3QT63 122 aa12.59□□□□□ -0.39
TRIM28-207ENST00000597136 SPRY1O43609 319 aaPredicted RBP12.59□□□□□ -0.39
TRIM28-207ENST00000597136 TMEM127O75204 238 aa12.59□□□□□ -0.39
TRIM28-207ENST00000597136 MPZP25189 248 aa12.59□□□□□ -0.39
TRIM28-207ENST00000597136 GATA4P43694 442 aa12.59□□□□□ -0.39
TRIM28-207ENST00000597136 LOXL1Q08397 574 aaPredicted RBP12.59□□□□□ -0.39
TRIM28-207ENST00000597136 AWAT2Q6E213 333 aa12.59□□□□□ -0.39
TRIM28-207ENST00000597136 ASCL4Q6XD76 172 aa12.59□□□□□ -0.39
TRIM28-207ENST00000597136 SLC25A26Q70HW3 274 aa12.59□□□□□ -0.39
TRIM28-207ENST00000597136 ZSCAN4Q8NAM6 433 aaPredicted RBP12.59□□□□□ -0.39
TRIM28-207ENST00000597136 AQP3Q92482 292 aa12.59□□□□□ -0.39
TRIM28-207ENST00000597136 FAM3DQ96BQ1 224 aa12.59□□□□□ -0.39
TRIM28-207ENST00000597136 PKIBQ9C010 78 aa12.59□□□□□ -0.39
TRIM28-207ENST00000597136 LIN7BQ9HAP6 207 aa12.59□□□□□ -0.39
TRIM28-207ENST00000597136 WIPI2Q9Y4P8 454 aa12.59□□□□□ -0.39
TRIM28-207ENST00000597136 SVEP1Q4LDE5 3571 aa12.59□□□□□ -0.39
TRIM28-207ENST00000597136 CLDN25C9JDP6 229 aa12.58□□□□□ -0.4
TRIM28-207ENST00000597136 TMEM178BH3BS89 294 aa12.58□□□□□ -0.4
TRIM28-207ENST00000597136 CDIPTO14735 213 aa12.58□□□□□ -0.4
TRIM28-207ENST00000597136 SYNGR1O43759 233 aa12.58□□□□□ -0.4
TRIM28-207ENST00000597136 ANGPTL7O43827 346 aa12.58□□□□□ -0.4
TRIM28-207ENST00000597136 IL24Q13007 206 aa12.58□□□□□ -0.4
TRIM28-207ENST00000597136 GLIPR1L1Q6UWM5 242 aa12.58□□□□□ -0.4
TRIM28-207ENST00000597136 LURAP1LQ8IV03 231 aa12.58□□□□□ -0.4
TRIM28-207ENST00000597136 SAXO1Q8IYX7 474 aa12.58□□□□□ -0.4
TRIM28-207ENST00000597136 C19orf18Q8NEA5 215 aa12.58□□□□□ -0.4
TRIM28-207ENST00000597136 PXT1Q8NFP0 134 aa12.58□□□□□ -0.4
TRIM28-207ENST00000597136 OR51D1Q8NGF3 324 aa12.58□□□□□ -0.4
TRIM28-207ENST00000597136 OR51F2Q8NH61 342 aa12.58□□□□□ -0.4
TRIM28-207ENST00000597136 TBC1D15Q8TC07 691 aa12.58□□□□□ -0.4
TRIM28-207ENST00000597136 KCTD12Q96CX2 325 aaKnown RBP12.58□□□□□ -0.4
TRIM28-207ENST00000597136 C1orf147Q96MC9 270 aaPredicted RBP12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms