RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 A0A1W2PPE3 182 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 IFNA10P01566 189 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 HLA-GP17693 338 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 DHRS11Q6UWP2 260 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 ANKRD37Q7Z713 158 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 NAA11Q9BSU3 229 aaPredicted RBP13.4□□□□□ -0.26
UPF1-204ENST00000596842 FSCN3Q9NQT6 498 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 MCTS1Q9ULC4 181 aaKnown RBP13.4□□□□□ -0.26
UPF1-204ENST00000596842 SRPK3Q9UPE1 567 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 DIDO1Q9BTC0 2240 aaKnown RBP13.4□□□□□ -0.26
UPF1-204ENST00000596842 DBX1A6NMT0 343 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 SCRG1O75711 98 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 CNOT4O95628 575 aaKnown RBP13.4□□□□□ -0.26
UPF1-204ENST00000596842 OR13C7P0DN81 318 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 ZNF17P17021 662 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 NOVA1P51513 510 aaKnown RBP13.4□□□□□ -0.26
UPF1-204ENST00000596842 UBE2V2Q15819 145 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 MST1LQ2TV78 715 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 TCEAL6Q6IPX3 200 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 BSCL2Q96G97 398 aaPredicted RBP13.4□□□□□ -0.26
UPF1-204ENST00000596842 PECRQ9BY49 303 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 TMPRSS5Q9H3S3 457 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 PISDQ9UG56 409 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.39□□□□□ -0.27
UPF1-204ENST00000596842 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.39□□□□□ -0.27
UPF1-204ENST00000596842 H3BMH7 237 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 TNFSF12O43508 249 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 TLX3O43711 291 aaPredicted RBP13.39□□□□□ -0.27
UPF1-204ENST00000596842 PIAS2O75928 621 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 JMJD7P0C870 316 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 PGA4P0DJD7 388 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 PGA3P0DJD8 388 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 CD79AP11912 226 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 CAMLGP49069 296 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 MIDNQ504T8 468 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 Q7L0L9 218 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 DOK3Q7L591 496 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 SLC39A7Q92504 469 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 KIRREL1Q96J84 757 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 UCN2Q96RP3 112 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 GPHA2Q96T91 129 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 RCC2Q9P258 522 aaKnown RBP13.39□□□□□ -0.27
UPF1-204ENST00000596842 RCL1Q9Y2P8 373 aaKnown RBP13.39□□□□□ -0.27
UPF1-204ENST00000596842 TBPP20226 339 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 CSNK1A1P48729 337 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 PIGPP57054 158 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 SURF2Q15527 256 aaPredicted RBP13.39□□□□□ -0.27
UPF1-204ENST00000596842 ERGIC1Q969X5 290 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 ZNF501Q96CX3 271 aaPredicted RBP13.39□□□□□ -0.27
UPF1-204ENST00000596842 SEC11CQ9BY50 192 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 SLC5A7Q9GZV3 580 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 SPACA1Q9HBV2 294 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 C1orf123Q9NWV4 160 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 F8VVB4 439 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 F8VWA3 439 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 MFNGO00587 321 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 GNG10P50151 68 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 CAV2P51636 162 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 TAS2R46P59540 309 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 GGNBP1Q5YKI7 109 aa13.39□□□□□ -0.27
UPF1-204ENST00000596842 PI4KAP42356 2102 aa13.38□□□□□ -0.27
UPF1-204ENST00000596842 TRAF3IP2O43734 574 aaPredicted RBP13.38□□□□□ -0.27
UPF1-204ENST00000596842 SRSF4Q08170 494 aaKnown RBP13.38□□□□□ -0.27
UPF1-204ENST00000596842 DTX1Q86Y01 620 aa13.38□□□□□ -0.27
UPF1-204ENST00000596842 MISPQ8IVT2 679 aa13.38□□□□□ -0.27
UPF1-204ENST00000596842 C1orf147Q96MC9 270 aaPredicted RBP13.38□□□□□ -0.27
UPF1-204ENST00000596842 IP6K3Q96PC2 410 aa13.38□□□□□ -0.27
UPF1-204ENST00000596842 ZNF385AQ96PM9 386 aaKnown RBP13.38□□□□□ -0.27
UPF1-204ENST00000596842 PADI1Q9ULC6 663 aa13.38□□□□□ -0.27
UPF1-204ENST00000596842 MEX3AA1L020 520 aaKnown RBP13.38□□□□□ -0.27
UPF1-204ENST00000596842 ZNF729A6NN14 1252 aaPredicted RBP13.38□□□□□ -0.27
UPF1-204ENST00000596842 NPIPA2E9PIF3 369 aa13.38□□□□□ -0.27
UPF1-204ENST00000596842 NPIPA3F8WFD2 350 aa13.38□□□□□ -0.27
UPF1-204ENST00000596842 OR5H8P0DN80 308 aa13.38□□□□□ -0.27
UPF1-204ENST00000596842 HKR1P10072 659 aa13.38□□□□□ -0.27
UPF1-204ENST00000596842 ZNF708P17019 499 aa13.38□□□□□ -0.27
UPF1-204ENST00000596842 PLPPR5Q32ZL2 321 aa13.38□□□□□ -0.27
UPF1-204ENST00000596842 ZNF528Q3MIS6 628 aa13.38□□□□□ -0.27
UPF1-204ENST00000596842 ZNF441Q8N8Z8 693 aa13.38□□□□□ -0.27
UPF1-204ENST00000596842 POC1BQ8TC44 478 aa13.38□□□□□ -0.27
UPF1-204ENST00000596842 LRP4O75096 1905 aa13.38□□□□□ -0.27
UPF1-204ENST00000596842 CBY3A6NI87 242 aa13.38□□□□□ -0.27
UPF1-204ENST00000596842 PPP1R2P9O14990 202 aa13.38□□□□□ -0.27
UPF1-204ENST00000596842 EIF5AP63241 154 aaKnown RBP13.38□□□□□ -0.27
UPF1-204ENST00000596842 D2HGDHQ8N465 521 aa13.38□□□□□ -0.27
UPF1-204ENST00000596842 ADAMTS17Q8TE56 1095 aa13.38□□□□□ -0.27
UPF1-204ENST00000596842 ZNF837Q96EG3 531 aaPredicted RBP13.38□□□□□ -0.27
UPF1-204ENST00000596842 TUBG2Q9NRH3 451 aa13.38□□□□□ -0.27
UPF1-204ENST00000596842 RFNGQ9Y644 331 aa13.38□□□□□ -0.27
UPF1-204ENST00000596842 DMDP11532 3685 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 HSPB6O14558 160 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 F10P00742 488 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 LCATP04180 440 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 ZP4Q12836 540 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 OR8G1Q15617 311 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 VAX1Q5SQQ9 334 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 TMEM131Q92545 1883 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 RAB33BQ9H082 229 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 A0A1W2PR77 199 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 CCNOP22674 350 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms