RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 ZCCHC24Q8N2G6 241 aaKnown RBP13.63□□□□□ -0.23
SS18-211ENST00000578954 RAB40AQ8WXH6 277 aa13.63□□□□□ -0.23
SS18-211ENST00000578954 SLAMF9Q96A28 289 aa13.63□□□□□ -0.23
SS18-211ENST00000578954 CEP19Q96LK0 163 aa13.63□□□□□ -0.23
SS18-211ENST00000578954 TM2D1Q9BX74 207 aa13.63□□□□□ -0.23
SS18-211ENST00000578954 TMEM59Q9BXS4 323 aa13.63□□□□□ -0.23
SS18-211ENST00000578954 HES4Q9HCC6 221 aa13.63□□□□□ -0.23
SS18-211ENST00000578954 GCM1Q9NP62 436 aa13.63□□□□□ -0.23
SS18-211ENST00000578954 ADAM30Q9UKF2 790 aa13.63□□□□□ -0.23
SS18-211ENST00000578954 CHD3Q12873 2000 aaKnown RBP13.63□□□□□ -0.23
SS18-211ENST00000578954 A0A1W2PP11 408 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 A6NLC8 198 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 SRRM5B3KS81 715 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 TRAPPC2LH3BP13 241 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 OVOL3O00110 214 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 RGS5O15539 181 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 EIF4EP06730 217 aaKnown RBP13.62□□□□□ -0.23
SS18-211ENST00000578954 MGMTP16455 207 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 BCL3P20749 454 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 SERPINA2P20848 420 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 TNFSF8P32971 234 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 S100A5P33763 92 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 NPBWR2P48146 333 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 ART1P52961 327 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 FGF12P61328 243 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 RPS27AP62979 156 aaKnown RBP13.62□□□□□ -0.23
SS18-211ENST00000578954 CCL8P80075 99 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 FAM189A2Q15884 450 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 ZNF826PQ6ZT77 177 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 BIVMQ86UB2 503 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 CCDC190Q86UF4 302 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 MOGAT3Q86VF5 341 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 OR51T1Q8NGJ9 327 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 OR10K1Q8NGX5 313 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 Q96M66 194 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 LPAR5Q9H1C0 372 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 SAP30LQ9HAJ7 183 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 DECR2Q9NUI1 292 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 UFSP2Q9NUQ7 469 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 C1orf123Q9NWV4 160 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 LAMP3Q9UQV4 416 aa13.62□□□□□ -0.23
SS18-211ENST00000578954 FASNP49327 2511 aaKnown RBP13.61□□□□□ -0.23
SS18-211ENST00000578954 DSCAMO60469 2012 aa13.61□□□□□ -0.23
SS18-211ENST00000578954 IGHV3-64DA0A0J9YX35 117 aa13.61□□□□□ -0.23
SS18-211ENST00000578954 F8VVB4 439 aa13.61□□□□□ -0.23
SS18-211ENST00000578954 F8VWA3 439 aa13.61□□□□□ -0.23
SS18-211ENST00000578954 IFNL4K9M1U5 179 aa13.61□□□□□ -0.23
SS18-211ENST00000578954 AKR7A2O43488 359 aa13.61□□□□□ -0.23
SS18-211ENST00000578954 HTR3BO95264 441 aa13.61□□□□□ -0.23
SS18-211ENST00000578954 MPIG6BO95866 241 aa13.61□□□□□ -0.23
SS18-211ENST00000578954 LHBP01229 141 aa13.61□□□□□ -0.23
SS18-211ENST00000578954 CSTBP04080 98 aaKnown RBP13.61□□□□□ -0.23
SS18-211ENST00000578954 GTF2F2P13984 249 aa13.61□□□□□ -0.23
SS18-211ENST00000578954 ELK1P19419 428 aa13.61□□□□□ -0.23
SS18-211ENST00000578954 COL8A1P27658 744 aa13.61□□□□□ -0.23
SS18-211ENST00000578954 CMTM4Q8IZR5 234 aa13.61□□□□□ -0.23
SS18-211ENST00000578954 OSR2Q8N2R0 312 aa13.61□□□□□ -0.23
SS18-211ENST00000578954 FAM89BQ8N5H3 189 aa13.61□□□□□ -0.23
SS18-211ENST00000578954 NEU4Q8WWR8 484 aaPredicted RBP13.61□□□□□ -0.23
SS18-211ENST00000578954 SOSTQ9BQB4 213 aa13.61□□□□□ -0.23
SS18-211ENST00000578954 NUDT16L1Q9BRJ7 211 aaKnown RBP13.61□□□□□ -0.23
SS18-211ENST00000578954 CACNG6Q9BXT2 260 aa13.61□□□□□ -0.23
SS18-211ENST00000578954 RAB1BQ9H0U4 201 aa13.61□□□□□ -0.23
SS18-211ENST00000578954 ELL3Q9HB65 397 aaPredicted RBP13.61□□□□□ -0.23
SS18-211ENST00000578954 HMG20AQ9NP66 347 aa13.61□□□□□ -0.23
SS18-211ENST00000578954 RBFOX1Q9NWB1 397 aaKnown RBP13.61□□□□□ -0.23
SS18-211ENST00000578954 TANC2Q9HCD6 1990 aa13.61□□□□□ -0.23
SS18-211ENST00000578954 A0A0A6YYH2 397 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 FAM90A10PA6NDY2 464 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 FAM90A18PA6NE21 464 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 FAM90A16PA6NEW6 464 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 FAM90A20PA6NIJ5 464 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 A6NJ64 397 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 FAM90A8PA6NJQ4 464 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 FAM90A7PA6NKC0 464 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 FOXI3A8MTJ6 420 aaPredicted RBP13.6□□□□□ -0.23
SS18-211ENST00000578954 FAM90A22PA8MWA6 464 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 FAM90A12PA8MX19 464 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 FAM90A5PA8MXJ8 464 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 FAM90A23PA8MXZ1 464 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 CRTAPO75718 401 aaPredicted RBP13.6□□□□□ -0.23
SS18-211ENST00000578954 SCGNO76038 276 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 TPPPO94811 219 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 INHBBP09529 407 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 FAM90A15PP0C7V4 464 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 FAM90A13PP0C7W8 464 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 FAM90A14PP0C7W9 464 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 FAM90A24PP0C7X0 464 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 SSTR2P30874 369 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 MNDAP41218 407 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 MRPS11P82912 194 aaKnown RBP13.6□□□□□ -0.23
SS18-211ENST00000578954 GCSAMQ8N6F7 178 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 LRRC29Q8WV35 223 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 HPS1Q92902 700 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 FAM46BQ96A09 425 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 ZNF488Q96MN9 340 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 URM1Q9BTM9 101 aaKnown RBP13.6□□□□□ -0.23
SS18-211ENST00000578954 BANF2Q9H503 90 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 AKIP1Q9NQ31 210 aa13.6□□□□□ -0.23
SS18-211ENST00000578954 RASL12Q9NYN1 266 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms