RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ASB17Q8WXJ9 295 aa17.04■□□□□ 0.32
VPS53-216ENST00000574029 NKX3-1Q99801 234 aaPredicted RBP17.04■□□□□ 0.32
VPS53-216ENST00000574029 NRIP2Q9BQI9 281 aa17.04■□□□□ 0.32
VPS53-216ENST00000574029 CDCA4Q9BXL8 241 aa17.04■□□□□ 0.32
VPS53-216ENST00000574029 HES4Q9HCC6 221 aa17.04■□□□□ 0.32
VPS53-216ENST00000574029 COPS3Q9UNS2 423 aa17.04■□□□□ 0.32
VPS53-216ENST00000574029 TCF19Q9Y242 345 aa17.04■□□□□ 0.32
VPS53-216ENST00000574029 PQLC2LA1A4F0 135 aa17.03■□□□□ 0.32
VPS53-216ENST00000574029 CCDC182A6NF36 153 aa17.03■□□□□ 0.32
VPS53-216ENST00000574029 FBXO24O75426 580 aa17.03■□□□□ 0.32
VPS53-216ENST00000574029 SRSF10O75494 262 aaKnown RBP17.03■□□□□ 0.32
VPS53-216ENST00000574029 MRPL3P09001 348 aaKnown RBP17.03■□□□□ 0.32
VPS53-216ENST00000574029 FCGR1AP12314 374 aa17.03■□□□□ 0.32
VPS53-216ENST00000574029 PRKACGP22612 351 aa17.03■□□□□ 0.32
VPS53-216ENST00000574029 RIDAP52758 137 aaKnown RBP17.03■□□□□ 0.32
VPS53-216ENST00000574029 DLX6P56179 175 aa17.03■□□□□ 0.32
VPS53-216ENST00000574029 LCN1P1Q5VSP4 162 aa17.03■□□□□ 0.32
VPS53-216ENST00000574029 CCBE1Q6UXH8 406 aaPredicted RBP17.03■□□□□ 0.32
VPS53-216ENST00000574029 ZNF782Q6ZMW2 699 aaPredicted RBP17.03■□□□□ 0.32
VPS53-216ENST00000574029 LYG1Q8N1E2 194 aa17.03■□□□□ 0.32
VPS53-216ENST00000574029 TEX12Q9BXU0 123 aa17.03■□□□□ 0.32
VPS53-216ENST00000574029 POLDIP2Q9Y2S7 368 aa17.03■□□□□ 0.32
VPS53-216ENST00000574029 TMEM14AQ9Y6G1 99 aa17.03■□□□□ 0.32
VPS53-216ENST00000574029 DLGAP1O14490 977 aa17.02■□□□□ 0.32
VPS53-216ENST00000574029 PIN1P1O15428 100 aa17.02■□□□□ 0.32
VPS53-216ENST00000574029 NXPH2O95156 264 aa17.02■□□□□ 0.32
VPS53-216ENST00000574029 CD28P10747 220 aa17.02■□□□□ 0.32
VPS53-216ENST00000574029 MPZP25189 248 aa17.02■□□□□ 0.32
VPS53-216ENST00000574029 EMX1Q04741 257 aaPredicted RBP17.02■□□□□ 0.32
VPS53-216ENST00000574029 HABP2Q14520 560 aaPredicted RBP17.02■□□□□ 0.32
VPS53-216ENST00000574029 CLVS2Q5SYC1 327 aa17.02■□□□□ 0.32
VPS53-216ENST00000574029 WIPF2Q8TF74 440 aaPredicted RBP17.02■□□□□ 0.32
VPS53-216ENST00000574029 DNAJC9Q8WXX5 260 aa17.02■□□□□ 0.32
VPS53-216ENST00000574029 GPR173Q9NS66 373 aa17.02■□□□□ 0.32
VPS53-216ENST00000574029 TBL2Q9Y4P3 447 aaKnown RBP17.02■□□□□ 0.32
VPS53-216ENST00000574029 V9GYS6 101 aa17.02■□□□□ 0.32
VPS53-216ENST00000574029 A6NDX4 124 aa17.01■□□□□ 0.31
VPS53-216ENST00000574029 ODF3BA8MYP8 253 aa17.01■□□□□ 0.31
VPS53-216ENST00000574029 XPNPEP2O43895 674 aa17.01■□□□□ 0.31
VPS53-216ENST00000574029 RAB13P51153 203 aa17.01■□□□□ 0.31
VPS53-216ENST00000574029 ERVK11-1P61568 191 aa17.01■□□□□ 0.31
VPS53-216ENST00000574029 SNAPC1Q16533 368 aa17.01■□□□□ 0.31
VPS53-216ENST00000574029 NSUN5P1Q3KNT7 163 aa17.01■□□□□ 0.31
VPS53-216ENST00000574029 OXLD1Q5BKU9 147 aa17.01■□□□□ 0.31
VPS53-216ENST00000574029 FAHD1Q6P587 224 aa17.01■□□□□ 0.31
VPS53-216ENST00000574029 NDUFA11Q86Y39 141 aa17.01■□□□□ 0.31
VPS53-216ENST00000574029 C10orf67Q8IYJ2 551 aa17.01■□□□□ 0.31
VPS53-216ENST00000574029 OR4S1Q8NGB4 309 aa17.01■□□□□ 0.31
VPS53-216ENST00000574029 FOXRED1Q96CU9 486 aaPredicted RBP17.01■□□□□ 0.31
VPS53-216ENST00000574029 MALSU1Q96EH3 234 aa17.01■□□□□ 0.31
VPS53-216ENST00000574029 TTTY10Q9BZA0 68 aa17.01■□□□□ 0.31
VPS53-216ENST00000574029 MOB1AQ9H8S9 216 aa17.01■□□□□ 0.31
VPS53-216ENST00000574029 TVP23BQ9NYZ1 205 aa17.01■□□□□ 0.31
VPS53-216ENST00000574029 OR14J1Q9UGF5 321 aa17.01■□□□□ 0.31
VPS53-216ENST00000574029 IKZF2Q9UKS7 526 aa17.01■□□□□ 0.31
VPS53-216ENST00000574029 K7N7A8 449 aa17■□□□□ 0.31
VPS53-216ENST00000574029 KPNB1Q14974 876 aaKnown RBP17■□□□□ 0.31
VPS53-216ENST00000574029 CNN3Q15417 329 aaKnown RBP17■□□□□ 0.31
VPS53-216ENST00000574029 PLA1AQ53H76 456 aa17■□□□□ 0.31
VPS53-216ENST00000574029 LDLRAD2Q5SZI1 272 aa17■□□□□ 0.31
VPS53-216ENST00000574029 Q6ZSR3 168 aa17■□□□□ 0.31
VPS53-216ENST00000574029 ELMOD2Q8IZ81 293 aa17■□□□□ 0.31
VPS53-216ENST00000574029 OR11H6Q8NGC7 330 aa17■□□□□ 0.31
VPS53-216ENST00000574029 OR14K1Q8NGZ2 314 aa17■□□□□ 0.31
VPS53-216ENST00000574029 MMP28Q9H239 520 aa17■□□□□ 0.31
VPS53-216ENST00000574029 A0A1B0GTI1 187 aa16.99■□□□□ 0.31
VPS53-216ENST00000574029 ADARB2-AS1A8MUL3 147 aa16.99■□□□□ 0.31
VPS53-216ENST00000574029 LOC110117498-PIK3R3F6TDL0 507 aa16.99■□□□□ 0.31
VPS53-216ENST00000574029 G3V2T6 193 aa16.99■□□□□ 0.31
VPS53-216ENST00000574029 RBP4P02753 201 aa16.99■□□□□ 0.31
VPS53-216ENST00000574029 ARG1P05089 322 aa16.99■□□□□ 0.31
VPS53-216ENST00000574029 PIPP12273 146 aaPredicted RBP16.99■□□□□ 0.31
VPS53-216ENST00000574029 DAPP51397 102 aa16.99■□□□□ 0.31
VPS53-216ENST00000574029 ZNF626Q68DY1 528 aa16.99■□□□□ 0.31
VPS53-216ENST00000574029 ZFP1Q6P2D0 407 aa16.99■□□□□ 0.31
VPS53-216ENST00000574029 AMIGO2Q86SJ2 522 aa16.99■□□□□ 0.31
VPS53-216ENST00000574029 BATF2Q8N1L9 274 aa16.99■□□□□ 0.31
VPS53-216ENST00000574029 OR13D1Q8NGV5 346 aa16.99■□□□□ 0.31
VPS53-216ENST00000574029 RPS4Y2Q8TD47 263 aa16.99■□□□□ 0.31
VPS53-216ENST00000574029 CENPNQ96H22 339 aaPredicted RBP16.99■□□□□ 0.31
VPS53-216ENST00000574029 CNN2Q99439 309 aaKnown RBP16.99■□□□□ 0.31
VPS53-216ENST00000574029 PKIBQ9C010 78 aa16.99■□□□□ 0.31
VPS53-216ENST00000574029 WNT10AQ9GZT5 417 aa16.99■□□□□ 0.31
VPS53-216ENST00000574029 ABCB10Q9NRK6 738 aa16.99■□□□□ 0.31
VPS53-216ENST00000574029 DSCAML1Q8TD84 2053 aa16.99■□□□□ 0.31
VPS53-216ENST00000574029 DHRS7CA6NNS2 312 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 ALX3O95076 343 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 ZNF728P0DKX0 622 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 DYNLT3P51808 116 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 CRISP1P54107 249 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 ESRRGP62508 458 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 COL10A1Q03692 680 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 IL24Q13007 206 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 SSX2Q16385 188 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 BCL2L15Q5TBC7 163 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 ZNF322Q6U7Q0 402 aaPredicted RBP16.98■□□□□ 0.31
VPS53-216ENST00000574029 TMEM219Q86XT9 240 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 ZDHHC13Q8IUH4 622 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 OR4F17Q8NGA8 305 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 MRAPQ8TCY5 172 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms