RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 TBX1O43435 398 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 AKR7A2O43488 359 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 XRCC2O43543 280 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 ZNF254O75437 659 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 LPLP06858 475 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 AMY2BP19961 511 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 CHATP28329 748 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 ECI1P42126 302 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 PTGES3Q15185 160 aaKnown RBP8.87□□□□□ -0.99
VPS53-207ENST00000570510 SLC25A30Q5SVS4 291 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 SLX4IPQ5VYV7 408 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 NXNL2Q5VZ03 156 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 ADAMTSL5Q6ZMM2 481 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 ZNF782Q6ZMW2 699 aaPredicted RBP8.87□□□□□ -0.99
VPS53-207ENST00000570510 GID4Q8IVV7 300 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 TIGD4Q8IY51 512 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 FTMTQ8N4E7 242 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 OR13D1Q8NGV5 346 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 OTOSQ8NHW6 89 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 ANGPTL6Q8NI99 470 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 ASB17Q8WXJ9 295 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 SPSB4Q96A44 273 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 MYCBPQ99417 103 aaPredicted RBP8.87□□□□□ -0.99
VPS53-207ENST00000570510 COPS4Q9BT78 406 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 PAPOLGQ9BWT3 736 aaKnown RBP8.87□□□□□ -0.99
VPS53-207ENST00000570510 GABARAPL3Q9BY60 117 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 ABCB9Q9NP78 766 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 NLKQ9UBE8 527 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 ORC6Q9Y5N6 252 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 DYNC2H1Q8NCM8 4307 aaKnown RBP8.87□□□□□ -0.99
VPS53-207ENST00000570510 JTBO76095 146 aa8.86□□□□□ -0.99
VPS53-207ENST00000570510 LY86O95711 162 aa8.86□□□□□ -0.99
VPS53-207ENST00000570510 PRKACGP22612 351 aa8.86□□□□□ -0.99
VPS53-207ENST00000570510 GLRA1P23415 457 aa8.86□□□□□ -0.99
VPS53-207ENST00000570510 PYCR1P32322 319 aa8.86□□□□□ -0.99
VPS53-207ENST00000570510 THBS3P49746 956 aa8.86□□□□□ -0.99
VPS53-207ENST00000570510 SNAPC1Q16533 368 aa8.86□□□□□ -0.99
VPS53-207ENST00000570510 TIGD6Q17RP2 521 aa8.86□□□□□ -0.99
VPS53-207ENST00000570510 C9orf152Q5JTZ5 239 aa8.86□□□□□ -0.99
VPS53-207ENST00000570510 KRT74Q7RTS7 529 aa8.86□□□□□ -0.99
VPS53-207ENST00000570510 DCXRQ7Z4W1 244 aa8.86□□□□□ -0.99
VPS53-207ENST00000570510 WDR86Q86TI4 376 aa8.86□□□□□ -0.99
VPS53-207ENST00000570510 DYNAPQ8N1N2 210 aa8.86□□□□□ -0.99
VPS53-207ENST00000570510 OR8J1Q8NGP2 316 aa8.86□□□□□ -0.99
VPS53-207ENST00000570510 OR6K6Q8NGW6 343 aa8.86□□□□□ -0.99
VPS53-207ENST00000570510 OR10Z1Q8NGY1 313 aa8.86□□□□□ -0.99
VPS53-207ENST00000570510 STMN2Q93045 179 aa8.86□□□□□ -0.99
VPS53-207ENST00000570510 RDH12Q96NR8 316 aa8.86□□□□□ -0.99
VPS53-207ENST00000570510 RTL8AQ9BWD3 113 aa8.86□□□□□ -0.99
VPS53-207ENST00000570510 C19orf12Q9NSK7 152 aa8.86□□□□□ -0.99
VPS53-207ENST00000570510 H2AFY2Q9P0M6 372 aaPredicted RBP8.86□□□□□ -0.99
VPS53-207ENST00000570510 LRP12Q9Y561 859 aa8.86□□□□□ -0.99
VPS53-207ENST00000570510 HILPDAQ9Y5L2 63 aa8.86□□□□□ -0.99
VPS53-207ENST00000570510 FAM90A8PA6NJQ4 464 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 SNTNA6NMZ2 147 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 LYNP07948 512 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 SLC2A1P11166 492 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 ATP6V1B1P15313 513 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 ALOX5APP20292 161 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 SLC2A5P22732 501 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 MYCNOSP40205 109 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 OPRL1P41146 370 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 CEBPDP49716 269 aaPredicted RBP8.85□□□□□ -0.99
VPS53-207ENST00000570510 PRKXP51817 358 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 ROM1Q03395 351 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 GFOD2Q3B7J2 385 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 ABCA11PQ4W5N1 156 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 C12orf73Q69YU5 71 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 SLC16A9Q7RTY1 509 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 CPOQ8IVL8 374 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 HS3ST5Q8IZT8 346 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 ZNF511Q8NB15 262 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 OR4M1Q8NGD0 313 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 OR2T27Q8NH04 317 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 NDNFQ8TB73 568 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 TMEM163Q8TC26 289 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 RPL3LQ92901 407 aaKnown RBP8.85□□□□□ -0.99
VPS53-207ENST00000570510 RFKQ969G6 155 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 SLAMF6Q96DU3 332 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 TEAD3Q99594 435 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 C9orf16Q9BUW7 83 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 WARS2Q9UGM6 360 aaKnown RBP8.85□□□□□ -0.99
VPS53-207ENST00000570510 OAZ3Q9UMX2 235 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 SMAD5-AS1Q9Y6J3 95 aa8.85□□□□□ -0.99
VPS53-207ENST00000570510 PSMB11A5LHX3 300 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 SLC1A7O00341 560 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 MPZL2O60487 215 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 ALPLP05186 524 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 ANXA2P07355 339 aaKnown RBP8.84□□□□□ -0.99
VPS53-207ENST00000570510 RPSAP08865 295 aaKnown RBP8.84□□□□□ -0.99
VPS53-207ENST00000570510 SPARCP09486 303 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 HSD11B1P28845 292 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 SLC6A1P30531 599 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 ALDH3A2P51648 485 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 DYNLT3P51808 116 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 CDC42P60953 191 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 KPNB1Q14974 876 aaKnown RBP8.84□□□□□ -0.99
VPS53-207ENST00000570510 C9orf66Q5T8R8 295 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 AADACL4Q5VUY2 407 aa8.84□□□□□ -0.99
VPS53-207ENST00000570510 MEDAGQ5VYS4 303 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms