RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 A0A0G2JNJ9 132 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 A0A1B0GUH1 482 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 LINC00854A0A1B0GVQ3 168 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 LRP5LA4QPB2 252 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 ZNF732B4DXR9 585 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 EEF1E1-BLOC1S5C9J1V9 151 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 INMT-MINDY4F8WBC2 141 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 H7C1Q1 480 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 SNAPC5O75971 98 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 WISP2O76076 250 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 HTR3BO95264 441 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 NGFP01138 241 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 TCRBP04435 133 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 IFNA6P05013 189 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 CECR9P0C854 216 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 BMP5P22003 454 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 MPZP25189 248 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 HLA-DMAP28067 261 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 BLVRBP30043 206 aaPredicted RBP6.84□□□□□ -1.31
VPS39-213ENST00000570062 CHRNB4P30926 498 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 ECI1P42126 302 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 VEGFCP49767 419 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 EFNB2P52799 333 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 NAAAQ02083 359 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 TNK1Q13470 666 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 ARFRP1Q13795 201 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 RBM39Q14498 530 aaKnown RBP6.84□□□□□ -1.31
VPS39-213ENST00000570062 SRSF7Q16629 238 aaKnown RBP eCLIP6.84□□□□□ -1.31
VPS39-213ENST00000570062 FBXL19-AS1Q494R0 122 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 RSBN1Q5VWQ0 802 aaPredicted RBP6.84□□□□□ -1.31
VPS39-213ENST00000570062 RGS7BPQ6MZT1 257 aaPredicted RBP6.84□□□□□ -1.31
VPS39-213ENST00000570062 STEAP1BQ6NZ63 245 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 BTN2A1Q7KYR7 527 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 TMEM17Q86X19 198 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 NAXEQ8NCW5 288 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 OR8G5Q8NG78 346 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 SLC25A40Q8TBP6 338 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 KLF14Q8TD94 323 aaPredicted RBP6.84□□□□□ -1.31
VPS39-213ENST00000570062 GTF3AQ92664 365 aaKnown RBP6.84□□□□□ -1.31
VPS39-213ENST00000570062 S100PBPQ96BU1 408 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 MARS2Q96GW9 593 aaKnown RBP6.84□□□□□ -1.31
VPS39-213ENST00000570062 C1orf147Q96MC9 270 aaPredicted RBP6.84□□□□□ -1.31
VPS39-213ENST00000570062 DMRTA2Q96SC8 542 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 PRRT1Q99946 306 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 SELENOIQ9C0D9 397 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 GPN1Q9HCN4 374 aaPredicted RBP6.84□□□□□ -1.31
VPS39-213ENST00000570062 HRASLSQ9HDD0 168 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 IFT46Q9NQC8 304 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 PLEKHJ1Q9NW61 149 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 KLK11Q9UBX7 282 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 Q9UFV3 132 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 NDRG3Q9UGV2 375 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 FBXO9Q9UK97 447 aaPredicted RBP6.84□□□□□ -1.31
VPS39-213ENST00000570062 MEIOCA2RUB1 952 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 C5orf63A6NC05 138 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 ZNF736B4DX44 427 aaPredicted RBP6.83□□□□□ -1.32
VPS39-213ENST00000570062 J3QT63 122 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 CD74P04233 296 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 CCL2P13500 99 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 NAT1P18440 290 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 SERPINA2P20848 420 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 FUT3P21217 361 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 DTYMKP23919 212 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 KIR2DL3P43628 341 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 HAAOP46952 286 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 ASCL1P50553 236 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 TAS2R46P59540 309 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 FGF12P61328 243 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 IL13RA2Q14627 380 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 CDK10Q15131 360 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 RBMS2Q15434 407 aaKnown RBP6.83□□□□□ -1.32
VPS39-213ENST00000570062 OR8G1Q15617 311 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 PLA1AQ53H76 456 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 RNASE10Q5GAN6 216 aaKnown RBP6.83□□□□□ -1.32
VPS39-213ENST00000570062 FAM209AQ5JX71 171 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 AGAP6Q5VW22 663 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 C11orf88Q6PI97 169 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 ZNF782Q6ZMW2 699 aaPredicted RBP6.83□□□□□ -1.32
VPS39-213ENST00000570062 RFPL4BQ6ZWI9 263 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 TRAPPC6BQ86SZ2 158 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 ZNF554Q86TJ5 538 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 WFDC8Q8IUA0 241 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 IZUMO1Q8IYV9 350 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 ARRDC1Q8N5I2 433 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 CELF2-AS1Q8N7Q2 184 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 ZNF611Q8N823 705 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 ACBD4Q8NC06 268 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 NUP37Q8NFH4 326 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 NPRL2Q8WTW4 380 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 CCDC107Q8WV48 283 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 Q96M66 194 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 SPACA5Q96QH8 159 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 DIRC2Q96SL1 478 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 OR2J1Q9GZK6 312 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 ALX4Q9H161 411 aaPredicted RBP6.83□□□□□ -1.32
VPS39-213ENST00000570062 CXXC4Q9H2H0 198 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 SLC2A8Q9NY64 477 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 NLKQ9UBE8 527 aa6.83□□□□□ -1.32
VPS39-213ENST00000570062 PURGQ9UJV8 347 aaKnown RBP6.83□□□□□ -1.32
VPS39-213ENST00000570062 ANKRD17O75179 2603 aaKnown RBP6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms