RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 MBOAT2Q6ZWT7 520 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 SSX6Q7RTT6 188 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 IFNEQ86WN2 208 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 NRMQ8IXM6 262 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 CPNE9Q8IYJ1 553 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 VKORC1L1Q8N0U8 176 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 LGI3Q8N145 548 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 SPICQ8N5J4 248 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 TMEM86BQ8N661 226 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 METTL13Q8N6R0 699 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 ZFP41Q8N8Y5 198 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 KBTBD8Q8NFY9 601 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 OR10W1Q8NGF6 305 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 OR6K6Q8NGW6 343 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 OR2T11Q8NH01 316 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 RPLP0P6Q8NHW5 317 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 ZNF502Q8TBZ5 544 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 FAM172AQ8WUF8 416 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 DNASE2BQ8WZ79 361 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 YIPF5Q969M3 257 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 S100PBPQ96BU1 408 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 LRRC58Q96CX6 371 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 SDSLQ96GA7 329 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 TMEM56Q96MV1 263 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 WFIKKN1Q96NZ8 548 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 ZIM3Q96PE6 472 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 OR5B12Q96R08 314 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 OR2V2Q96R30 315 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 P2RX4Q99571 388 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 EBNA1BP2Q99848 306 aaKnown RBP2.39□□□□□ -2.03
VPS35-209ENST00000568642 APOL4Q9BPW4 351 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 RNF126Q9BV68 326 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 DDA1Q9BW61 102 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 OSBPL11Q9BXB4 747 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 CALN1Q9BXU9 219 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 UGT2B28Q9BY64 529 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 SLC29A3Q9BZD2 475 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 OR51J1Q9H342 316 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 RBKSQ9H477 322 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 DHX35Q9H5Z1 703 aaKnown RBP2.39□□□□□ -2.03
VPS35-209ENST00000568642 NT5DC2Q9H857 520 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 NMUR1Q9HB89 426 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 WFDC1Q9HC57 220 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 ABCB9Q9NP78 766 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 EXD2Q9NVH0 621 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 KCNG2Q9UJ96 466 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 MGAT4AQ9UM21 535 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 ZNF257Q9Y2Q1 563 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 PAM16Q9Y3D7 125 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 OR51B2Q9Y5P1 312 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 ALG5Q9Y673 324 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 TMEM56-RWDD3S4R434 201 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 MYH10P35580 1976 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 TGIF2-C20orf24A0A0A6YYL0 155 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 CENPVL3A0A0U1RRI6 287 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 MEIOCA2RUB1 952 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 ZNF726A6NNF4 738 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 ZNF878C9JN71 531 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 NEDD8-MDP1E9PL57 170 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 H3BNH8 94 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 K7EQG2 157 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 K7ERI5 159 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 LAD1O00515 517 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 TNFSF12O43508 249 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 DPM1O60762 260 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 ZG16O60844 167 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 CA11O75493 328 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 GCM2O75603 506 aaPredicted RBP2.38□□□□□ -2.03
VPS35-209ENST00000568642 SCRG1O75711 98 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 GATBO75879 557 aaKnown RBP2.38□□□□□ -2.03
VPS35-209ENST00000568642 PTTG1O95997 202 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 HAND1O96004 215 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 NGFP01138 241 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 TNNC2P02585 160 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 SEMG1P04279 462 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 ISG15P05161 165 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 C2P06681 752 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 CST2P09228 141 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 TFPTP0C1Z6 253 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 PGA5P0DJD9 388 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 HKR1P10072 659 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 CDH1P12830 882 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 ICAM2P13598 275 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 RPL35AP18077 110 aaKnown RBP2.38□□□□□ -2.03
VPS35-209ENST00000568642 GZMHP20718 246 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 MSNP26038 577 aaKnown RBP2.38□□□□□ -2.03
VPS35-209ENST00000568642 ELK4P28324 431 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 GRPRP30550 384 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 RANBP1P43487 201 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 OR1D4P47884 311 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 ATP4BP51164 291 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 APOC4P55056 127 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 OR4D2P58180 307 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 TAS2R60P59551 318 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 ABCE1P61221 599 aaKnown RBP2.38□□□□□ -2.03
VPS35-209ENST00000568642 BLOC1S1P78537 153 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 TRAF2Q12933 501 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 KRR1Q13601 381 aaKnown RBP2.38□□□□□ -2.03
VPS35-209ENST00000568642 FLOT2Q14254 428 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 TAB1Q15750 504 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms