RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 OR8B2Q96RD0 313 aa11.49□□□□□ -0.57
CLN3-235ENST00000568497 SSBP3Q9BWW4 388 aaPredicted RBP11.49□□□□□ -0.57
CLN3-235ENST00000568497 ZMAT3Q9HA38 289 aaKnown RBP11.49□□□□□ -0.57
CLN3-235ENST00000568497 HHLA2Q9UM44 414 aa11.49□□□□□ -0.57
CLN3-235ENST00000568497 CAB39Q9Y376 341 aaPredicted RBP11.49□□□□□ -0.57
CLN3-235ENST00000568497 EXOSC1Q9Y3B2 195 aaKnown RBP11.49□□□□□ -0.57
CLN3-235ENST00000568497 HSPE1-MOB4S4R3N1 261 aa11.49□□□□□ -0.57
CLN3-235ENST00000568497 RYR3Q15413 4870 aa11.49□□□□□ -0.57
CLN3-235ENST00000568497 MAGEA13PA6NCF6 341 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 EFCAB10A6NFE3 127 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 TMEM210A6NLX4 147 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 J3QLI3 93 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 M0QZ24 198 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 DVL1O14640 695 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 CDK1P06493 297 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 DUSP1P28562 367 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 NPBWR2P48146 333 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 SRSF4Q08170 494 aaKnown RBP11.48□□□□□ -0.57
CLN3-235ENST00000568497 MZT1Q08AG7 82 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 BAMBIQ13145 260 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 RIPK1Q13546 671 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 PDCD1Q15116 288 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 DGUOKQ16854 277 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 TUSC1Q2TAM9 212 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 ESCO2Q56NI9 601 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 FAM76BQ5HYJ3 339 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 C17orf107Q6ZR85 190 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 DCDC5Q6ZRR9 648 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 SLC25A26Q70HW3 274 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 MUC20Q8N307 709 aaPredicted RBP11.48□□□□□ -0.57
CLN3-235ENST00000568497 SLC25A28Q96A46 364 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 GAFA1Q96PS6 74 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 JAM3Q9BX67 310 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 CHST5Q9GZS9 411 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 C7orf69Q9H7B7 122 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 BABAM2Q9NXR7 383 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 OR14J1Q9UGF5 321 aa11.48□□□□□ -0.57
CLN3-235ENST00000568497 IGKV1D-17A0A075B6S4 117 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 TRAV38-1A0A0B4J264 116 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 IGKV1-12A0A0C4DH73 117 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 OR5B21A6NL26 309 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 J3QT63 122 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 IFNL4K9M1U5 179 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 FOXH1O75593 365 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 IGKV1D-12P01611 117 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 ISG15P05161 165 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 RPSAP08865 295 aaKnown RBP11.47□□□□□ -0.57
CLN3-235ENST00000568497 PSG2P11465 335 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 BCL3P20749 454 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 OMGP23515 440 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 AZGP1P25311 298 aaKnown RBP11.47□□□□□ -0.57
CLN3-235ENST00000568497 VHLP40337 213 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 CCR9P51686 369 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 PAX2Q02962 417 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 ZBTB37Q5TC79 503 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 TEX36Q5VZQ5 186 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 STUMQ69YW2 141 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 TMPRSS11AQ6ZMR5 421 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 KRT74Q7RTS7 529 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 PDZD9Q8IXQ8 264 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 CD177Q8N6Q3 437 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 GHSRQ92847 366 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 CYYR1Q96J86 154 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 ANKRD60Q9BZ19 345 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 CCDC90BQ9GZT6 254 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 PLCXD1Q9NUJ7 323 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 CHCHD3Q9NX63 227 aaKnown RBP11.47□□□□□ -0.57
CLN3-235ENST00000568497 MTCH1Q9NZJ7 389 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 NLKQ9UBE8 527 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 CLN8Q9UBY8 286 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 MIOXQ9UGB7 285 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 SLC7A11Q9UPY5 501 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 DHDHQ9UQ10 334 aa11.47□□□□□ -0.57
CLN3-235ENST00000568497 RFPL4AA6NLU0 287 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 RFPL4AL1F8VTS6 287 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 MYL12BO14950 172 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 OGG1O15527 345 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 KNG1P01042 644 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 FSHBP01225 129 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 SFTPBP07988 381 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 PGA5P0DJD9 388 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 PIPP12273 146 aaPredicted RBP11.46□□□□□ -0.57
CLN3-235ENST00000568497 TGM4P49221 684 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 MTCP1P56278 107 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 ERVFRD-1P60508 538 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 MICBQ29980 383 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 BRICD5Q6PL45 260 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 ACP7Q6ZNF0 438 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 BCL6BQ8N143 479 aaPredicted RBP11.46□□□□□ -0.57
CLN3-235ENST00000568497 NANOGP1Q8N7R0 232 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 ZNRF1Q8ND25 227 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 ANGPTL6Q8NI99 470 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 TMIGD2Q96BF3 282 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 BORCS8Q96FH0 119 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 MRPL48Q96GC5 212 aaKnown RBP11.46□□□□□ -0.57
CLN3-235ENST00000568497 PGLYRP3Q96LB9 341 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 NUDT16L1Q9BRJ7 211 aaKnown RBP11.46□□□□□ -0.57
CLN3-235ENST00000568497 COMMD4Q9H0A8 199 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 RBFOX1Q9NWB1 397 aaKnown RBP11.46□□□□□ -0.57
CLN3-235ENST00000568497 CNOT2Q9NZN8 540 aaKnown RBP11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms