RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 VIPAS39Q9H9C1 493 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 PAPOLBQ9NRJ5 636 aaKnown RBP5.8□□□□□ -1.48
VPS4A-203ENST00000564399 DPM3Q9P2X0 92 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 NKX1-2Q9UD57 310 aaPredicted RBP5.8□□□□□ -1.48
VPS4A-203ENST00000564399 RAB21Q9UL25 225 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 ZNF256Q9Y2P7 627 aaPredicted RBP5.8□□□□□ -1.48
VPS4A-203ENST00000564399 SESN1Q9Y6P5 492 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 PCLOQ9Y6V0 5065 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 HYDINQ4G0P3 5121 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 K7N7A8 449 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 GSC2O15499 205 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 AMY1AP04745 511 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 AMY2AP04746 511 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 CLUP10909 449 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 OPRL1P41146 370 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 HAAOP46952 286 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 GSSP48637 474 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 SLC35B1P78383 322 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 TSPAN31Q12999 210 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 CRMP1Q14194 572 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 EDDM3AQ14507 147 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 RPL13AP3Q6NVV1 102 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 ZBTB49Q6ZSB9 765 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 SHFQ7M4L6 423 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 OVCH2Q7RTZ1 564 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 COMMD2Q86X83 199 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 RP9Q8TA86 221 aaKnown RBP5.79□□□□□ -1.48
VPS4A-203ENST00000564399 OTULINQ96BN8 352 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 RCN3Q96D15 328 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 C7orf34Q96L11 122 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 DHRS1Q96LJ7 313 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 CITED4Q96RK1 184 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 AMELYQ99218 206 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 SIKE1Q9BRV8 207 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 TMEM133Q9H2Q1 129 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 MRGBPQ9NV56 204 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 INTS9Q9NV88 658 aaKnown RBP5.79□□□□□ -1.48
VPS4A-203ENST00000564399 LINC00527Q9UJ94 153 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 SLC22A13Q9Y226 551 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 POLDIP2Q9Y2S7 368 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 CDH10Q9Y6N8 788 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 V9GYQ6 96 aa5.79□□□□□ -1.48
VPS4A-203ENST00000564399 hADV38S2A0JD32 116 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 SERPINE3A8MV23 424 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 LEUTXA8MZ59 168 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 J3QT63 122 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 NME4O00746 187 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 EDF1O60869 148 aaKnown RBP5.78□□□□□ -1.48
VPS4A-203ENST00000564399 H2AFXP16104 143 aaPredicted RBP5.78□□□□□ -1.48
VPS4A-203ENST00000564399 GSTT1P30711 240 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 MEF2CQ06413 473 aaPredicted RBP5.78□□□□□ -1.48
VPS4A-203ENST00000564399 RIPPLY1Q0D2K3 151 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 SF3A3Q12874 501 aaKnown RBP eCLIP5.78□□□□□ -1.48
VPS4A-203ENST00000564399 DEFB136Q30KP8 78 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 ZNF260Q3ZCT1 412 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 ZNF684Q5T5D7 378 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 LCNL1Q6ZST4 164 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 KRT77Q7Z794 578 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 TRAPPC6BQ86SZ2 158 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 ZNF573Q86YE8 665 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 ABHD12Q8N2K0 398 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 COMMD1Q8N668 190 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 TPRX1Q8N7U7 411 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 OR8B12Q8NGG6 310 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 OR4P4Q8NGL7 312 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 OR4Q3Q8NH05 313 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 OR8U1Q8NH10 309 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 TRMT10AQ8TBZ6 339 aaKnown RBP5.78□□□□□ -1.48
VPS4A-203ENST00000564399 ZNF596Q8TC21 504 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 THEM6Q8WUY1 208 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 KCTD14Q9BQ13 255 aaPredicted RBP5.78□□□□□ -1.48
VPS4A-203ENST00000564399 NRIP2Q9BQI9 281 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 NMNAT2Q9BZQ4 307 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 NIPAL2Q9H841 368 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 SAR1AQ9NR31 198 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 SCOCQ9UIL1 159 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 PIGLQ9Y2B2 252 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 MOB4Q9Y3A3 225 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 LYVE1Q9Y5Y7 322 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 HSPE1-MOB4S4R3N1 261 aa5.78□□□□□ -1.48
VPS4A-203ENST00000564399 RYR1P21817 5038 aa5.77□□□□□ -1.48
VPS4A-203ENST00000564399 FAM172BPA6NC97 362 aa5.77□□□□□ -1.49
VPS4A-203ENST00000564399 RIIAD1A6NNX1 92 aa5.77□□□□□ -1.49
VPS4A-203ENST00000564399 PSMD9O00233 223 aa5.77□□□□□ -1.49
VPS4A-203ENST00000564399 NOS1APO75052 506 aaPredicted RBP5.77□□□□□ -1.49
VPS4A-203ENST00000564399 GMNNO75496 209 aa5.77□□□□□ -1.49
VPS4A-203ENST00000564399 MMP23AO75900 390 aa5.77□□□□□ -1.49
VPS4A-203ENST00000564399 JTBO76095 146 aa5.77□□□□□ -1.49
VPS4A-203ENST00000564399 NRASP01111 189 aa5.77□□□□□ -1.49
VPS4A-203ENST00000564399 IFNGP01579 166 aa5.77□□□□□ -1.49
VPS4A-203ENST00000564399 LYNP07948 512 aa5.77□□□□□ -1.49
VPS4A-203ENST00000564399 FAM106CPP0CH98 169 aa5.77□□□□□ -1.49
VPS4A-203ENST00000564399 CEACAM3P40198 252 aa5.77□□□□□ -1.49
VPS4A-203ENST00000564399 MNDAP41218 407 aa5.77□□□□□ -1.49
VPS4A-203ENST00000564399 PSMA6P60900 246 aaKnown RBP5.77□□□□□ -1.49
VPS4A-203ENST00000564399 BDH1Q02338 343 aa5.77□□□□□ -1.49
VPS4A-203ENST00000564399 SAMD4BQ5PRF9 694 aaKnown RBP5.77□□□□□ -1.49
VPS4A-203ENST00000564399 LINC01590Q5TEZ4 76 aa5.77□□□□□ -1.49
VPS4A-203ENST00000564399 GLYATQ6IB77 296 aa5.77□□□□□ -1.49
VPS4A-203ENST00000564399 ASRGL1Q7L266 308 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms