RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 C17orf98A8MV24 154 aa13.61□□□□□ -0.23
CLN3-211ENST00000564091 ARG1P05089 322 aa13.61□□□□□ -0.23
CLN3-211ENST00000564091 SSX2Q16385 188 aa13.61□□□□□ -0.23
CLN3-211ENST00000564091 TMEM42Q69YG0 159 aa13.61□□□□□ -0.23
CLN3-211ENST00000564091 PLEKHG7Q6ZR37 379 aa13.61□□□□□ -0.23
CLN3-211ENST00000564091 REC114Q7Z4M0 266 aa13.61□□□□□ -0.23
CLN3-211ENST00000564091 BCDIN3DQ7Z5W3 292 aaKnown RBP13.61□□□□□ -0.23
CLN3-211ENST00000564091 CALHM1Q8IU99 346 aa13.61□□□□□ -0.23
CLN3-211ENST00000564091 Q8N2B8 174 aa13.61□□□□□ -0.23
CLN3-211ENST00000564091 DTX3Q8N9I9 347 aa13.61□□□□□ -0.23
CLN3-211ENST00000564091 MRAPQ8TCY5 172 aa13.61□□□□□ -0.23
CLN3-211ENST00000564091 ASB17Q8WXJ9 295 aa13.61□□□□□ -0.23
CLN3-211ENST00000564091 R3HDM4Q96D70 268 aa13.61□□□□□ -0.23
CLN3-211ENST00000564091 CITED2Q99967 270 aaPredicted RBP13.61□□□□□ -0.23
CLN3-211ENST00000564091 APOL4Q9BPW4 351 aa13.61□□□□□ -0.23
CLN3-211ENST00000564091 TEX12Q9BXU0 123 aa13.61□□□□□ -0.23
CLN3-211ENST00000564091 HES4Q9HCC6 221 aa13.61□□□□□ -0.23
CLN3-211ENST00000564091 ABCB10Q9NRK6 738 aa13.61□□□□□ -0.23
CLN3-211ENST00000564091 POLDIP2Q9Y2S7 368 aa13.61□□□□□ -0.23
CLN3-211ENST00000564091 TET2Q6N021 2002 aaPredicted RBP13.61□□□□□ -0.23
CLN3-211ENST00000564091 LOC110117498-PIK3R3F6TDL0 507 aa13.6□□□□□ -0.23
CLN3-211ENST00000564091 XPNPEP2O43895 674 aa13.6□□□□□ -0.23
CLN3-211ENST00000564091 SRSF10O75494 262 aaKnown RBP13.6□□□□□ -0.23
CLN3-211ENST00000564091 ALX3O95076 343 aa13.6□□□□□ -0.23
CLN3-211ENST00000564091 ANXA8P13928 327 aa13.6□□□□□ -0.23
CLN3-211ENST00000564091 JUNBP17275 347 aaPredicted RBP13.6□□□□□ -0.23
CLN3-211ENST00000564091 CALB2P22676 271 aa13.6□□□□□ -0.23
CLN3-211ENST00000564091 COL10A1Q03692 680 aa13.6□□□□□ -0.23
CLN3-211ENST00000564091 EMX1Q04741 257 aaPredicted RBP13.6□□□□□ -0.23
CLN3-211ENST00000564091 CNN3Q15417 329 aaKnown RBP13.6□□□□□ -0.23
CLN3-211ENST00000564091 LCN1P1Q5VSP4 162 aa13.6□□□□□ -0.23
CLN3-211ENST00000564091 ZNF322Q6U7Q0 402 aaPredicted RBP13.6□□□□□ -0.23
CLN3-211ENST00000564091 Q6ZS46 218 aa13.6□□□□□ -0.23
CLN3-211ENST00000564091 OR4S1Q8NGB4 309 aa13.6□□□□□ -0.23
CLN3-211ENST00000564091 OR14K1Q8NGZ2 314 aa13.6□□□□□ -0.23
CLN3-211ENST00000564091 SGCDQ92629 289 aa13.6□□□□□ -0.23
CLN3-211ENST00000564091 MALSU1Q96EH3 234 aa13.6□□□□□ -0.23
CLN3-211ENST00000564091 THTPAQ9BU02 230 aa13.6□□□□□ -0.23
CLN3-211ENST00000564091 CDCA4Q9BXL8 241 aa13.6□□□□□ -0.23
CLN3-211ENST00000564091 SLC22A13Q9Y226 551 aa13.6□□□□□ -0.23
CLN3-211ENST00000564091 ZNF281Q9Y2X9 895 aa13.6□□□□□ -0.23
CLN3-211ENST00000564091 TMEM14AQ9Y6G1 99 aa13.6□□□□□ -0.23
CLN3-211ENST00000564091 V9GYS6 101 aa13.6□□□□□ -0.23
CLN3-211ENST00000564091 A0A1B0GTI1 187 aa13.59□□□□□ -0.23
CLN3-211ENST00000564091 AQP12BA6NM10 295 aa13.59□□□□□ -0.23
CLN3-211ENST00000564091 ADARB2-AS1A8MUL3 147 aa13.59□□□□□ -0.23
CLN3-211ENST00000564091 ODF3BA8MYP8 253 aa13.59□□□□□ -0.23
CLN3-211ENST00000564091 F8VVB4 439 aa13.59□□□□□ -0.23
CLN3-211ENST00000564091 F8VWA3 439 aa13.59□□□□□ -0.23
CLN3-211ENST00000564091 K7N7A8 449 aa13.59□□□□□ -0.23
CLN3-211ENST00000564091 DLGAP1O14490 977 aa13.59□□□□□ -0.23
CLN3-211ENST00000564091 PRKYO43930 277 aa13.59□□□□□ -0.23
CLN3-211ENST00000564091 ZNF728P0DKX0 622 aa13.59□□□□□ -0.23
CLN3-211ENST00000564091 CXCR4P61073 352 aa13.59□□□□□ -0.23
CLN3-211ENST00000564091 BLCAPP62952 87 aa13.59□□□□□ -0.23
CLN3-211ENST00000564091 DYNC1I2Q13409 638 aaKnown RBP13.59□□□□□ -0.23
CLN3-211ENST00000564091 BCL2L15Q5TBC7 163 aa13.59□□□□□ -0.23
CLN3-211ENST00000564091 NDUFA11Q86Y39 141 aa13.59□□□□□ -0.23
CLN3-211ENST00000564091 AQP12AQ8IXF9 295 aa13.59□□□□□ -0.23
CLN3-211ENST00000564091 ASCC1Q8N9N2 400 aaKnown RBP13.59□□□□□ -0.23
CLN3-211ENST00000564091 OR13D1Q8NGV5 346 aa13.59□□□□□ -0.23
CLN3-211ENST00000564091 TRMT10AQ8TBZ6 339 aaKnown RBP13.59□□□□□ -0.23
CLN3-211ENST00000564091 RPS4Y2Q8TD47 263 aa13.59□□□□□ -0.23
CLN3-211ENST00000564091 WIPF2Q8TF74 440 aaPredicted RBP13.59□□□□□ -0.23
CLN3-211ENST00000564091 CNN2Q99439 309 aaKnown RBP13.59□□□□□ -0.23
CLN3-211ENST00000564091 NECAP2Q9NVZ3 263 aa13.59□□□□□ -0.23
CLN3-211ENST00000564091 OR52A1Q9UKL2 312 aa13.59□□□□□ -0.23
CLN3-211ENST00000564091 R4GMQ9 66 aa13.59□□□□□ -0.23
CLN3-211ENST00000564091 FAM230AA0A1W2PPH8 454 aa13.58□□□□□ -0.24
CLN3-211ENST00000564091 M0R129 80 aa13.58□□□□□ -0.24
CLN3-211ENST00000564091 ZNF737O75373 536 aa13.58□□□□□ -0.24
CLN3-211ENST00000564091 PEX14O75381 377 aa13.58□□□□□ -0.24
CLN3-211ENST00000564091 INMTO95050 263 aa13.58□□□□□ -0.24
CLN3-211ENST00000564091 MPZP25189 248 aa13.58□□□□□ -0.24
CLN3-211ENST00000564091 CRISP1P54107 249 aa13.58□□□□□ -0.24
CLN3-211ENST00000564091 EDDM3BP56851 147 aa13.58□□□□□ -0.24
CLN3-211ENST00000564091 LOXL3P58215 753 aa13.58□□□□□ -0.24
CLN3-211ENST00000564091 ERVK11-1P61568 191 aa13.58□□□□□ -0.24
CLN3-211ENST00000564091 ZNF626Q68DY1 528 aa13.58□□□□□ -0.24
CLN3-211ENST00000564091 ELMOD2Q8IZ81 293 aa13.58□□□□□ -0.24
CLN3-211ENST00000564091 OR4F17Q8NGA8 305 aa13.58□□□□□ -0.24
CLN3-211ENST00000564091 FOXRED1Q96CU9 486 aaPredicted RBP13.58□□□□□ -0.24
CLN3-211ENST00000564091 OR4F4Q96R69 305 aa13.58□□□□□ -0.24
CLN3-211ENST00000564091 PRSS22Q9GZN4 317 aa13.58□□□□□ -0.24
CLN3-211ENST00000564091 WNT10AQ9GZT5 417 aa13.58□□□□□ -0.24
CLN3-211ENST00000564091 AURKAIP1Q9NWT8 199 aaPredicted RBP13.58□□□□□ -0.24
CLN3-211ENST00000564091 MRM2Q9UI43 246 aaKnown RBP13.58□□□□□ -0.24
CLN3-211ENST00000564091 TBL2Q9Y4P3 447 aaKnown RBP13.58□□□□□ -0.24
CLN3-211ENST00000564091 HILPDAQ9Y5L2 63 aa13.58□□□□□ -0.24
CLN3-211ENST00000564091 H3BSH0 61 aa13.57□□□□□ -0.24
CLN3-211ENST00000564091 CHRM2P08172 466 aa13.57□□□□□ -0.24
CLN3-211ENST00000564091 IGHV1-8P0DP01 117 aa13.57□□□□□ -0.24
CLN3-211ENST00000564091 CBX1P83916 185 aa13.57□□□□□ -0.24
CLN3-211ENST00000564091 PTGES3Q15185 160 aaKnown RBP13.57□□□□□ -0.24
CLN3-211ENST00000564091 ODF4Q2M2E3 257 aa13.57□□□□□ -0.24
CLN3-211ENST00000564091 TMEM95Q3KNT9 176 aa13.57□□□□□ -0.24
CLN3-211ENST00000564091 MEPCEQ7L2J0 689 aaKnown RBP13.57□□□□□ -0.24
CLN3-211ENST00000564091 TCF23Q7RTU1 214 aa13.57□□□□□ -0.24
CLN3-211ENST00000564091 SPATA24Q86W54 205 aa13.57□□□□□ -0.24
CLN3-211ENST00000564091 SLC35F2Q8IXU6 374 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms