RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 ZNF429Q86V71 674 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 HOGA1Q86XE5 327 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 ZNF573Q86YE8 665 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 AQP3Q92482 292 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 TSLPQ969D9 159 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 RCC1LQ96I51 464 aaKnown RBP11.7□□□□□ -0.54
CLK3-206ENST00000562078 NUDT9Q9BW91 350 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 NMNAT2Q9BZQ4 307 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 CHST11Q9NPF2 352 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 MYOTQ9UBF9 498 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 H3BMH7 237 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 HSPA12AO43301 675 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 GUSBP08236 651 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 IRF2P14316 349 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 EPHA1P21709 976 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 GABRR1P24046 479 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 PEAR1Q5VY43 1037 aaPredicted RBP11.7□□□□□ -0.54
CLK3-206ENST00000562078 LRRC69Q6ZNQ3 347 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 DCXRQ7Z4W1 244 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 RABEPKQ7Z6M1 372 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 ADGRE4PQ86SQ3 457 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 ZNF283Q8N7M2 679 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 GATSQ8NAP1 163 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 CHST4Q8NCG5 386 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 C22orf15Q8WYQ4 148 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 DUSP23Q9BVJ7 150 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 CHRNA10Q9GZZ6 450 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 GTF2A1LQ9UNN4 478 aa11.7□□□□□ -0.54
CLK3-206ENST00000562078 TMEM210A6NLX4 147 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 IFNL4K9M1U5 179 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 DUX1O43812 170 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 APOBEC1P41238 236 aaKnown RBP11.69□□□□□ -0.54
CLK3-206ENST00000562078 ZNF260Q3ZCT1 412 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 FBXW9Q5XUX1 488 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 ABLIM2Q6H8Q1 611 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 ZNF705AQ6ZN79 300 aaPredicted RBP11.69□□□□□ -0.54
CLK3-206ENST00000562078 TMEM156Q8N614 296 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 OR51A2Q8NGJ7 313 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 OR2I1PQ8NGU4 316 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 OR1L3Q8NH93 324 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 FAM213BQ8TBF2 198 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 SAP25Q8TEE9 199 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 PTPMT1Q8WUK0 201 aaPredicted RBP11.69□□□□□ -0.54
CLK3-206ENST00000562078 MRGPRX4Q96LA9 322 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 OR8D2Q9GZM6 311 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 WFDC1Q9HC57 220 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 TAS2R4Q9NYW5 299 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 SLC22A13Q9Y226 551 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 SERINC4A6NH21 518 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 CDC14BO60729 498 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 TK1P04183 234 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 TBPP20226 339 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 CDKN2AP42771 156 aaKnown RBP11.69□□□□□ -0.54
CLK3-206ENST00000562078 PRPS1P60891 318 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 LCN10Q6JVE6 187 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 ULK3Q6PHR2 472 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 SLC16A9Q7RTY1 509 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 C1orf87Q8N0U7 546 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 OR1P1Q8NH06 330 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 OR4X1Q8NH49 305 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 URM1Q9BTM9 101 aaKnown RBP11.69□□□□□ -0.54
CLK3-206ENST00000562078 HSF4Q9ULV5 492 aa11.69□□□□□ -0.54
CLK3-206ENST00000562078 SEC11BP0C7V7 166 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 FOLR1P15328 257 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 CLDN6P56747 220 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 SLC37A1P57057 533 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 PCK2Q16822 640 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 PHF19Q5T6S3 580 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 TMEM225Q6GV28 225 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 PLXDC1Q8IUK5 500 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 CYB561D1Q8N8Q1 229 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 EXD3Q8N9H8 876 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 SRA1Q9HD15 236 aaKnown RBP11.68□□□□□ -0.54
CLK3-206ENST00000562078 EXPH5Q8NEV8 1989 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 KMT2EQ8IZD2 1858 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 RBFOX3A6NFN3 312 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 CER1O95813 267 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 CST2P09228 141 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 GNB3P16520 340 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 CCR4P51679 360 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 EFNA3P52797 238 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 OR5I1Q13606 314 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.68□□□□□ -0.54
CLK3-206ENST00000562078 TMEM182Q6ZP80 229 aaPredicted RBP11.68□□□□□ -0.54
CLK3-206ENST00000562078 FAM185AQ8N0U4 392 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 C4orf45Q96LM5 186 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 DCBLD2Q96PD2 775 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 AMELYQ99218 206 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 ELOVL1Q9BW60 279 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 NXF5Q9H1B4 397 aaKnown RBP11.68□□□□□ -0.54
CLK3-206ENST00000562078 OR52A1Q9UKL2 312 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 GPR132Q9UNW8 380 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 SRPK3Q9UPE1 567 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 LSM5Q9Y4Y9 91 aaKnown RBP11.68□□□□□ -0.54
CLK3-206ENST00000562078 RFNGQ9Y644 331 aa11.68□□□□□ -0.54
CLK3-206ENST00000562078 CHD3Q12873 2000 aaKnown RBP11.68□□□□□ -0.54
CLK3-206ENST00000562078 FTCDNL1E5RQL4 147 aa11.67□□□□□ -0.54
CLK3-206ENST00000562078 BRS3P32247 399 aa11.67□□□□□ -0.54
CLK3-206ENST00000562078 GALNSP34059 522 aa11.67□□□□□ -0.54
CLK3-206ENST00000562078 RND3P61587 244 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms