RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ZNF767PQ75MW2 155 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 BHLHA15Q7RTS1 189 aaPredicted RBP6.49□□□□□ -1.37
VPS39-204ENST00000561818 MDP1Q86V88 176 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 SLC25A42Q86VD7 318 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 FAM90A1Q86YD7 464 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 SPACA3Q8IXA5 215 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 CCDC71LQ8N9Z2 235 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 TMEM185AQ8NFB2 350 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 OR51F2Q8NH61 342 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 OR2AE1Q8NHA4 323 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 LILRB1Q8NHL6 650 aaPredicted RBP6.49□□□□□ -1.37
VPS39-204ENST00000561818 CMSS1Q9BQ75 279 aaKnown RBP6.49□□□□□ -1.37
VPS39-204ENST00000561818 PECRQ9BY49 303 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 ZNF436Q9C0F3 470 aaPredicted RBP6.49□□□□□ -1.37
VPS39-204ENST00000561818 PPA2Q9H2U2 334 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 SEBOXQ9HB31 216 aaPredicted RBP6.49□□□□□ -1.37
VPS39-204ENST00000561818 COMMD9Q9P000 198 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 DUX4Q9UBX2 424 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 PRSS50Q9UI38 385 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 KLK13Q9UKR3 277 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 ST3GAL6Q9Y274 331 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 ZNF292O60281 2723 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 NCKAP5O14513 1909 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 MED13Q9UHV7 2174 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 DNAJC13O75165 2243 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 TRBV6-6A0A0A6YYG2 114 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 A0A0B4J293 547 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 TMEM8BA6NDV4 472 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 HMSDA8MTL9 139 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 MCRIP1C9JLW8 97 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 LMX1BO60663 402 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 OR2A4O95047 310 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 CRYAAP02489 173 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 OR4E1P0C645 316 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 GNB3P16520 340 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 WT1P19544 449 aaPredicted RBP6.48□□□□□ -1.37
VPS39-204ENST00000561818 KITLGP21583 273 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 CHATP28329 748 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 CEACAM8P31997 349 aaPredicted RBP6.48□□□□□ -1.37
VPS39-204ENST00000561818 HRH1P35367 487 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 SNU13P55769 128 aaKnown RBP6.48□□□□□ -1.37
VPS39-204ENST00000561818 UCP2P55851 309 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 UCP3P55916 312 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 PMP22Q01453 160 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 SCGB2B2Q4G0G5 96 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 MBNL2Q5VZF2 373 aaKnown RBP6.48□□□□□ -1.37
VPS39-204ENST00000561818 TRAT1Q6PIZ9 186 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 LYG2Q86SG7 212 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 RBMXL3Q8N7X1 1067 aaKnown RBP6.48□□□□□ -1.37
VPS39-204ENST00000561818 C9orf106Q8NAJ2 232 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 TMEM104Q8NE00 496 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 OR5P3Q8WZ94 311 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 FBXW5Q969U6 566 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 WBP1Q96G27 269 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 ARHGAP5-AS1Q96IT6 56 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 FAM210AQ96ND0 272 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 OR2A7Q96R45 310 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 DIRC2Q96SL1 478 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 SCNM1Q9BWG6 230 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 POFUT1Q9H488 388 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 RANGRFQ9HD47 186 aaPredicted RBP6.48□□□□□ -1.37
VPS39-204ENST00000561818 ZNF71Q9NQZ8 489 aaPredicted RBP6.48□□□□□ -1.37
VPS39-204ENST00000561818 RASL12Q9NYN1 266 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 MGAT4CQ9UBM8 478 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 ANXA10Q9UJ72 324 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 KCNIP3Q9Y2W7 256 aa6.48□□□□□ -1.37
VPS39-204ENST00000561818 TNRC6AQ8NDV7 1962 aaKnown RBP6.48□□□□□ -1.37
VPS39-204ENST00000561818 TUBAL3A6NHL2 446 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 ZNF850A8MQ14 1090 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 F5H5P2 479 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 PYCARD-AS1I3L0S3 204 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 SOCS1O15524 211 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 NOS1APO75052 506 aaPredicted RBP6.47□□□□□ -1.37
VPS39-204ENST00000561818 TNFSF13O75888 250 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 OR7C1O76099 320 aaPredicted RBP6.47□□□□□ -1.37
VPS39-204ENST00000561818 CGAP01215 116 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 HLA-AP01891 365 aaKnown RBP6.47□□□□□ -1.37
VPS39-204ENST00000561818 TK1P04183 234 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 GABRR1P24046 479 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 DNASE1P24855 282 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 CD34P28906 385 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 HAAOP46952 286 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 IL13RA1P78552 427 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 HGFACQ04756 655 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 MADCAM1Q13477 382 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 C3AR1Q16581 482 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 HIKESHIQ53FT3 197 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 FAM76BQ5HYJ3 339 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 PLAC9Q5JTB6 97 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 ZNF324BQ6AW86 544 aaPredicted RBP6.47□□□□□ -1.37
VPS39-204ENST00000561818 OR10K2Q6IF99 312 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 SLC25A26Q70HW3 274 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 OVCH2Q7RTZ1 564 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 SLC36A1Q7Z2H8 476 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 C12orf45Q8N5I9 185 aaPredicted RBP6.47□□□□□ -1.37
VPS39-204ENST00000561818 ASCC1Q8N9N2 400 aaKnown RBP6.47□□□□□ -1.37
VPS39-204ENST00000561818 OR2AK2Q8NG84 335 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 OR13G1Q8NGZ3 307 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 PPP1R35Q8TAP8 253 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 NPRL2Q8WTW4 380 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms