RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 TEAD3Q99594 435 aa7.41□□□□□ -1.22
HDDC3-204ENST00000559834 CITED2Q99967 270 aaPredicted RBP7.41□□□□□ -1.22
HDDC3-204ENST00000559834 NRIP2Q9BQI9 281 aa7.41□□□□□ -1.22
HDDC3-204ENST00000559834 TAS2R1Q9NYW7 299 aa7.41□□□□□ -1.22
HDDC3-204ENST00000559834 OR14J1Q9UGF5 321 aa7.41□□□□□ -1.22
HDDC3-204ENST00000559834 NUFIP1Q9UHK0 495 aaKnown RBP7.41□□□□□ -1.22
HDDC3-204ENST00000559834 KLHDC2Q9Y2U9 406 aa7.41□□□□□ -1.22
HDDC3-204ENST00000559834 PQLC2LA1A4F0 135 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 PSMD9O00233 223 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 F2RL2O00254 374 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 SYNGR1O43759 233 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 IGLV3-1P01715 115 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 ZNF728P0DKX0 622 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 PIPP12273 146 aaPredicted RBP7.4□□□□□ -1.22
HDDC3-204ENST00000559834 CD33P20138 364 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 SLC2A5P22732 501 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 DYNLT3P51808 116 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 MEF2CQ06413 473 aaPredicted RBP7.4□□□□□ -1.22
HDDC3-204ENST00000559834 DYNC1I2Q13409 638 aaKnown RBP7.4□□□□□ -1.22
HDDC3-204ENST00000559834 APOFQ13790 326 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 HABP2Q14520 560 aaPredicted RBP7.4□□□□□ -1.22
HDDC3-204ENST00000559834 ZNF273Q14593 569 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 SNAPC1Q16533 368 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 PLA1AQ53H76 456 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 MINOS1Q5TGZ0 78 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 TMEM42Q69YG0 159 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 ASRGL1Q7L266 308 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 PIGWQ7Z7B1 504 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 ASCC1Q8N9N2 400 aaKnown RBP7.4□□□□□ -1.22
HDDC3-204ENST00000559834 OR11H6Q8NGC7 330 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 PHF21AQ96BD5 680 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 ASB9Q96DX5 294 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 ZNF488Q96MN9 340 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 OR8B4Q96RC9 309 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 WNT10AQ9GZT5 417 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 MOB1AQ9H8S9 216 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 HES4Q9HCC6 221 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 AURKAIP1Q9NWT8 199 aaPredicted RBP7.4□□□□□ -1.22
HDDC3-204ENST00000559834 H2AFY2Q9P0M6 372 aaPredicted RBP7.4□□□□□ -1.22
HDDC3-204ENST00000559834 IKZF2Q9UKS7 526 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 GTF2A1LQ9UNN4 478 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 SLC7A11Q9UPY5 501 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 SLC22A13Q9Y226 551 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 MINOS1-NBL1R4GNA1 71 aa7.4□□□□□ -1.22
HDDC3-204ENST00000559834 hADV38S2A0JD32 116 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 DHRS7CA6NNS2 312 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 ODF3BA8MYP8 253 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 LOC110117498-PIK3R3F6TDL0 507 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 TTRP02766 147 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 IGHV1-8P0DP01 117 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 MPZP25189 248 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 AZGP1P25311 298 aaKnown RBP7.39□□□□□ -1.23
HDDC3-204ENST00000559834 VDAC2P45880 294 aaPredicted RBP7.39□□□□□ -1.23
HDDC3-204ENST00000559834 CEBPDP49716 269 aaPredicted RBP7.39□□□□□ -1.23
HDDC3-204ENST00000559834 DLX6P56179 175 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 EDDM3BP56851 147 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 ERVK11-1P61568 191 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 COL10A1Q03692 680 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 IL24Q13007 206 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 VAX1Q5SQQ9 334 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 ZNF626Q68DY1 528 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 ZBTB49Q6ZSB9 765 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 CENPVQ7Z7K6 275 aaPredicted RBP7.39□□□□□ -1.23
HDDC3-204ENST00000559834 TMEM219Q86XT9 240 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 ELMOD2Q8IZ81 293 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 DYNAPQ8N1N2 210 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 BBS1Q8NFJ9 593 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 OR5AU1Q8NGC0 362 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 WIPF2Q8TF74 440 aaPredicted RBP7.39□□□□□ -1.23
HDDC3-204ENST00000559834 CAPSLQ8WWF8 208 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 AKR1E2Q96JD6 320 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 SNX22Q96L94 193 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 ZNF714Q96N38 554 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 OR5M11Q96RB7 305 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 MNTQ99583 582 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 PKIBQ9C010 78 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 SLC25A19Q9HC21 320 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.39□□□□□ -1.23
HDDC3-204ENST00000559834 GPR173Q9NS66 373 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 TVP23BQ9NYZ1 205 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 DNAJB9Q9UBS3 223 aa7.39□□□□□ -1.23
HDDC3-204ENST00000559834 AQP12BA6NM10 295 aa7.38□□□□□ -1.23
HDDC3-204ENST00000559834 DNAJC8O75937 253 aaPredicted RBP7.38□□□□□ -1.23
HDDC3-204ENST00000559834 DUS4LO95620 317 aaKnown RBP7.38□□□□□ -1.23
HDDC3-204ENST00000559834 CLIC3O95833 236 aa7.38□□□□□ -1.23
HDDC3-204ENST00000559834 SERPINA3P01011 423 aa7.38□□□□□ -1.23
HDDC3-204ENST00000559834 MRPL3P09001 348 aaKnown RBP7.38□□□□□ -1.23
HDDC3-204ENST00000559834 PF4V1P10720 104 aa7.38□□□□□ -1.23
HDDC3-204ENST00000559834 PRKACGP22612 351 aa7.38□□□□□ -1.23
HDDC3-204ENST00000559834 BRS3P32247 399 aa7.38□□□□□ -1.23
HDDC3-204ENST00000559834 ACTA2P62736 377 aa7.38□□□□□ -1.23
HDDC3-204ENST00000559834 BLCAPP62952 87 aa7.38□□□□□ -1.23
HDDC3-204ENST00000559834 ACTG2P63267 376 aa7.38□□□□□ -1.23
HDDC3-204ENST00000559834 ACTC1P68032 377 aa7.38□□□□□ -1.23
HDDC3-204ENST00000559834 ACTA1P68133 377 aa7.38□□□□□ -1.23
HDDC3-204ENST00000559834 CD83Q01151 205 aa7.38□□□□□ -1.23
HDDC3-204ENST00000559834 SLC34A1Q06495 639 aa7.38□□□□□ -1.23
HDDC3-204ENST00000559834 IL18R1Q13478 541 aa7.38□□□□□ -1.23
HDDC3-204ENST00000559834 BCL2L15Q5TBC7 163 aa7.38□□□□□ -1.23
HDDC3-204ENST00000559834 FOXB2Q5VYV0 432 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms