RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 GNG13Q9P2W3 67 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 UBE2J1Q9Y385 318 aaPredicted RBP9.96□□□□□ -0.81
LDLR-208ENST00000558518 A6NIZ1 184 aa9.96□□□□□ -0.82
LDLR-208ENST00000558518 H3BQ15 152 aa9.96□□□□□ -0.82
LDLR-208ENST00000558518 TAAR5O14804 337 aa9.96□□□□□ -0.82
LDLR-208ENST00000558518 GSTP1P09211 210 aaKnown RBP9.96□□□□□ -0.82
LDLR-208ENST00000558518 HOXB1P14653 301 aaPredicted RBP9.96□□□□□ -0.82
LDLR-208ENST00000558518 MMP16P51512 607 aa9.96□□□□□ -0.82
LDLR-208ENST00000558518 ZNF41P51814 821 aaPredicted RBP9.96□□□□□ -0.82
LDLR-208ENST00000558518 RAP1BP61224 184 aa9.96□□□□□ -0.82
LDLR-208ENST00000558518 C10orf91Q5T1B1 145 aa9.96□□□□□ -0.82
LDLR-208ENST00000558518 LCN15Q6UWW0 184 aa9.96□□□□□ -0.82
LDLR-208ENST00000558518 C7orf61Q8IZ16 206 aa9.96□□□□□ -0.82
LDLR-208ENST00000558518 HPSE2Q8WWQ2 592 aa9.96□□□□□ -0.82
LDLR-208ENST00000558518 MARS2Q96GW9 593 aaKnown RBP9.96□□□□□ -0.82
LDLR-208ENST00000558518 TCTN2Q96GX1 697 aa9.96□□□□□ -0.82
LDLR-208ENST00000558518 WFIKKN1Q96NZ8 548 aa9.96□□□□□ -0.82
LDLR-208ENST00000558518 ZNF442Q9H7R0 627 aa9.96□□□□□ -0.82
LDLR-208ENST00000558518 TIMM10BQ9Y5J6 103 aa9.96□□□□□ -0.82
LDLR-208ENST00000558518 FRG2CA6NGY1 282 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 E9PLN8 166 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 IGHV2-70P01814 119 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 HEXAP06865 529 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 AGAP20933 346 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 CTHP32929 405 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 GPX4P36969 197 aaPredicted RBP9.95□□□□□ -0.82
LDLR-208ENST00000558518 FGF8P55075 233 aaPredicted RBP9.95□□□□□ -0.82
LDLR-208ENST00000558518 OR1D5P58170 312 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 MYBPHQ13203 477 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 ZNF239Q16600 458 aaKnown RBP9.95□□□□□ -0.82
LDLR-208ENST00000558518 TMEM268Q5VZI3 342 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 CYB561D1Q8N8Q1 229 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 SSX3Q99909 188 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 ZDHHC8Q9ULC8 765 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 DEDDO75618 318 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 DDAH2O95865 285 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 CLPSP04118 112 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 CXCL1P09341 107 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 PRF1P14222 555 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 HERV-K104P61576 105 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 RPL23AP62750 156 aaKnown RBP9.95□□□□□ -0.82
LDLR-208ENST00000558518 DLK1P80370 383 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 PNLIPRP3Q17RR3 467 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 TMEM240Q5SV17 173 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 HIST2H3PS2Q5TEC6 136 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 ZNF880Q6PDB4 577 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 Q6ZS52 159 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 ZNF721Q8TF20 911 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 LRRC61Q9BV99 259 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 SDHAF3Q9NRP4 125 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 LHFPL6Q9Y693 200 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 A0A087WZY1 265 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 IGKV1-9A0A0C4DH69 117 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 ALG1L2C9J202 215 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 YKT6O15498 198 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 MRPS34P82930 218 aaKnown RBP9.95□□□□□ -0.82
LDLR-208ENST00000558518 SRSF4Q08170 494 aaKnown RBP9.95□□□□□ -0.82
LDLR-208ENST00000558518 FZD2Q14332 565 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 ZNF429Q86V71 674 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 DNAJB11Q9UBS4 358 aa9.95□□□□□ -0.82
LDLR-208ENST00000558518 HSPB2A8KAH6 182 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 OR2J2O76002 312 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 OR7C1O76099 320 aaPredicted RBP9.94□□□□□ -0.82
LDLR-208ENST00000558518 ZNF16P17020 682 aaPredicted RBP9.94□□□□□ -0.82
LDLR-208ENST00000558518 MLF1P58340 268 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 RPS18P62269 152 aaKnown RBP9.94□□□□□ -0.82
LDLR-208ENST00000558518 HSPB2Q16082 182 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 IZUMO4Q1ZYL8 232 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 ZNF610Q8N9Z0 462 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 UBALD1Q8TB05 177 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 ADIPOR1Q96A54 375 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 UFSP2Q9NUQ7 469 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 SRPK3Q9UPE1 567 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 CACNA1EQ15878 2313 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 FREM2Q5SZK8 3169 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 TRBV6-7A0A0A0MS04 114 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 NSG1A0A0A6YYJ2 146 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 NDUFB7P17568 137 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 QRFPP83859 136 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 PIGYQ3MUY2 71 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 LURAP1LQ8IV03 231 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 PRR18Q8N4B5 295 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 DDIT4LQ96D03 193 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 A0A087X0M5 115 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 A0A1B0GX30 115 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 E5RGE8 158 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 ST8SIA3O43173 380 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 SOX15O60248 233 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 CYTIPO60759 359 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 SCGNO76038 276 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 IGHG1P01857 330 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 FOLR1P15328 257 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 TBPP20226 339 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 DUSP1P28562 367 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 RABIFP47224 123 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 EFNA3P52797 238 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 RPS16P62249 146 aaKnown RBP9.94□□□□□ -0.82
LDLR-208ENST00000558518 SLC38A9Q8NBW4 561 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 DMBX1Q8NFW5 382 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 GPBAR1Q8TDU6 330 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms