RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 WNT5AP41221 380 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 TDGF1P3P51864 188 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 P2RY6Q15077 328 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 NKPD1Q17RQ9 610 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 OR52W1Q6IF63 320 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 VWA1Q6PCB0 445 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 PIAS4Q8N2W9 510 aaPredicted RBP14.5□□□□□ -0.09
LDLR-206ENST00000557958 RPRMLQ8N4K4 120 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 ARRDC1Q8N5I2 433 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 ZNF611Q8N823 705 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 OR5A2Q8NGI9 324 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 WBP1Q96G27 269 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 ZNF75AQ96N20 296 aa14.5□□□□□ -0.09
LDLR-206ENST00000557958 MYOZ1Q9NP98 299 aaPredicted RBP14.5□□□□□ -0.09
LDLR-206ENST00000557958 PRRG2O14669 202 aa14.49□□□□□ -0.09
LDLR-206ENST00000557958 CSN2P05814 226 aa14.49□□□□□ -0.09
LDLR-206ENST00000557958 HOXD4P09016 255 aaPredicted RBP14.49□□□□□ -0.09
LDLR-206ENST00000557958 AMY2BP19961 511 aa14.49□□□□□ -0.09
LDLR-206ENST00000557958 HTR2BP41595 481 aa14.49□□□□□ -0.09
LDLR-206ENST00000557958 FOXF2Q12947 444 aa14.49□□□□□ -0.09
LDLR-206ENST00000557958 C4orf46Q504U0 113 aa14.49□□□□□ -0.09
LDLR-206ENST00000557958 VAX1Q5SQQ9 334 aa14.49□□□□□ -0.09
LDLR-206ENST00000557958 LAMTOR1Q6IAA8 161 aa14.49□□□□□ -0.09
LDLR-206ENST00000557958 SLC36A1Q7Z2H8 476 aa14.49□□□□□ -0.09
LDLR-206ENST00000557958 TMEM17Q86X19 198 aa14.49□□□□□ -0.09
LDLR-206ENST00000557958 ZDHHC22Q8N966 263 aa14.49□□□□□ -0.09
LDLR-206ENST00000557958 NOP16Q9Y3C1 178 aaKnown RBP14.49□□□□□ -0.09
LDLR-206ENST00000557958 ZZEF1O43149 2961 aa14.49□□□□□ -0.09
LDLR-206ENST00000557958 PRSS44E7EML9 344 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 CBR1P16152 277 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 IDH3GP51553 393 aaPredicted RBP14.48□□□□□ -0.09
LDLR-206ENST00000557958 NKAPLQ5M9Q1 402 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 C1orf185Q5T7R7 199 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 BEND4Q6ZU67 534 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 RFPL4BQ6ZWI9 263 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 HOGA1Q86XE5 327 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 MED12LQ86YW9 2145 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 OR5H2Q8NGV7 314 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 SNAPC3Q92966 411 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 ZNF436Q9C0F3 470 aaPredicted RBP14.48□□□□□ -0.09
LDLR-206ENST00000557958 POFUT1Q9H488 388 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 RTTNQ86VV8 2226 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 OR5B21A6NL26 309 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 FABP7O15540 132 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 IL2RAP01589 272 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 CXCL3P19876 107 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 OR3A3P47888 321 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 FBXW12Q6X9E4 464 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 SLC25A26Q70HW3 274 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 TMEM200AQ86VY9 491 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 MKXQ8IYA7 352 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 ANGPTL6Q8NI99 470 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 FBXW5Q969U6 566 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 MGAT4CQ9UBM8 478 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 EDARQ9UNE0 448 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 NPTNQ9Y639 398 aa14.48□□□□□ -0.09
LDLR-206ENST00000557958 BSNQ9UPA5 3926 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 FAM90A10PA6NDY2 464 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 FAM90A18PA6NE21 464 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 FAM90A16PA6NEW6 464 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 FAM90A20PA6NIJ5 464 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 FAM90A8PA6NJQ4 464 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 FAM90A7PA6NKC0 464 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 FAM90A22PA8MWA6 464 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 FAM90A12PA8MX19 464 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 FAM90A5PA8MXJ8 464 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 FAM90A23PA8MXZ1 464 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 H3BUI4 141 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 TPD52L2O43399 206 aaKnown RBP14.47□□□□□ -0.09
LDLR-206ENST00000557958 TNFSF13O75888 250 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 FAM90A15PP0C7V4 464 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 FAM90A13PP0C7W8 464 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 FAM90A14PP0C7W9 464 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 FAM90A24PP0C7X0 464 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 VSIG10L2P0DP72 767 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 SFTPCP11686 197 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 SELEP16581 610 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 GPM6AP51674 278 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 TAF9Q16594 264 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 SEM1Q6ZVN7 128 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 TMED4Q7Z7H5 227 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 FBXL14Q8N1E6 418 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 C9orf62Q8N4C0 152 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 ZNF431Q8TF32 576 aaPredicted RBP14.47□□□□□ -0.09
LDLR-206ENST00000557958 SCGB3A2Q96PL1 93 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 TINAGQ9UJW2 476 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 ST3GAL6Q9Y274 331 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 FAM215AQ9Y5M1 114 aa14.47□□□□□ -0.09
LDLR-206ENST00000557958 IGKV1-12A0A0C4DH73 117 aa14.46□□□□□ -0.09
LDLR-206ENST00000557958 SMPD2O60906 423 aa14.46□□□□□ -0.09
LDLR-206ENST00000557958 IGKV1D-12P01611 117 aa14.46□□□□□ -0.09
LDLR-206ENST00000557958 PMP2P02689 132 aa14.46□□□□□ -0.09
LDLR-206ENST00000557958 TUBG1P23258 451 aa14.46□□□□□ -0.09
LDLR-206ENST00000557958 HAAOP46952 286 aa14.46□□□□□ -0.09
LDLR-206ENST00000557958 SNU13P55769 128 aaKnown RBP14.46□□□□□ -0.09
LDLR-206ENST00000557958 RBM11P57052 281 aaKnown RBP14.46□□□□□ -0.09
LDLR-206ENST00000557958 TSPAN5P62079 268 aa14.46□□□□□ -0.09
LDLR-206ENST00000557958 PPP1CBP62140 327 aa14.46□□□□□ -0.09
LDLR-206ENST00000557958 MICBQ29980 383 aa14.46□□□□□ -0.09
LDLR-206ENST00000557958 ATPAF1Q5TC12 328 aaPredicted RBP14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms