RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 TBC1D15Q8TC07 691 aa12.68□□□□□ -0.38
SHMT2-204ENST00000553324 FAM216AQ8WUB2 273 aa12.68□□□□□ -0.38
SHMT2-204ENST00000553324 SPSB1Q96BD6 273 aa12.68□□□□□ -0.38
SHMT2-204ENST00000553324 ADAT3Q96EY9 351 aaPredicted RBP12.68□□□□□ -0.38
SHMT2-204ENST00000553324 ZMAT3Q9HA38 289 aaKnown RBP12.68□□□□□ -0.38
SHMT2-204ENST00000553324 EXOSC1Q9Y3B2 195 aaKnown RBP12.68□□□□□ -0.38
SHMT2-204ENST00000553324 TRBV23-1A0A0A0MS06 115 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 TRAV40A0A0B4J280 105 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 TRBV2A0A0J9YWF9 115 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 A0A1B0GW55 424 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 FCN3O75636 299 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 RGS9O75916 674 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-204ENST00000553324 CLIC3O95833 236 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 KNG1P01042 644 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 MT-ND2P03891 347 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 DUX4L2P0CJ85 424 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 DUX4L3P0CJ86 424 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 DUX4L4P0CJ87 422 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 DUX4L5P0CJ88 424 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 DUX4L6P0CJ89 424 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 DUX4L7P0CJ90 424 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 MMP9P14780 707 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 NDUFB7P17568 137 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 ATF1P18846 271 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 MTCP1P56278 107 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 ERVK11-1P61568 191 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 ELF3P78545 371 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-204ENST00000553324 SLC34A1Q06495 639 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 SMN1Q16637 294 aaKnown RBP12.67□□□□□ -0.38
SHMT2-204ENST00000553324 RPL22L1Q6P5R6 122 aaKnown RBP12.67□□□□□ -0.38
SHMT2-204ENST00000553324 DUX4L9Q6RFH8 374 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-204ENST00000553324 CALHM1Q8IU99 346 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 SERPINA12Q8IW75 414 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 KIR3DL3Q8N743 410 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 OR5D14Q8NGL3 314 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 CNIH3Q8TBE1 160 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 GATAD2BQ8WXI9 593 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 H1FXQ92522 213 aaKnown RBP12.67□□□□□ -0.38
SHMT2-204ENST00000553324 TMEM80Q96HE8 168 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 HES4Q9HCC6 221 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 DUX4Q9UBX2 424 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 ZNF222Q9UK12 451 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 DIMT1Q9UNQ2 313 aaKnown RBP12.67□□□□□ -0.38
SHMT2-204ENST00000553324 MAB21L2Q9Y586 359 aa12.67□□□□□ -0.38
SHMT2-204ENST00000553324 A0A1W2PPH5 198 aa12.66□□□□□ -0.38
SHMT2-204ENST00000553324 EFCAB10A6NFE3 127 aa12.66□□□□□ -0.38
SHMT2-204ENST00000553324 ALX3O95076 343 aa12.66□□□□□ -0.38
SHMT2-204ENST00000553324 ZFPL1O95159 310 aa12.66□□□□□ -0.38
SHMT2-204ENST00000553324 LIMS3P0CW19 117 aa12.66□□□□□ -0.38
SHMT2-204ENST00000553324 LIMS4P0CW20 117 aa12.66□□□□□ -0.38
SHMT2-204ENST00000553324 CAPZA1P52907 286 aa12.66□□□□□ -0.38
SHMT2-204ENST00000553324 BLMHQ13867 455 aa12.66□□□□□ -0.38
SHMT2-204ENST00000553324 FIP1L1Q6UN15 594 aaKnown RBP12.66□□□□□ -0.38
SHMT2-204ENST00000553324 BCL6BQ8N143 479 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-204ENST00000553324 SIGLECL1Q8N7X8 197 aa12.66□□□□□ -0.38
SHMT2-204ENST00000553324 ZNRF1Q8ND25 227 aa12.66□□□□□ -0.38
SHMT2-204ENST00000553324 TMEM185AQ8NFB2 350 aa12.66□□□□□ -0.38
SHMT2-204ENST00000553324 NPRL2Q8WTW4 380 aa12.66□□□□□ -0.38
SHMT2-204ENST00000553324 CEP19Q96LK0 163 aa12.66□□□□□ -0.38
SHMT2-204ENST00000553324 ZNF488Q96MN9 340 aa12.66□□□□□ -0.38
SHMT2-204ENST00000553324 TBX15Q96SF7 602 aa12.66□□□□□ -0.38
SHMT2-204ENST00000553324 FAM234AQ9H0X4 552 aa12.66□□□□□ -0.38
SHMT2-204ENST00000553324 SIRPDQ9H106 197 aa12.66□□□□□ -0.38
SHMT2-204ENST00000553324 ZCCHC4Q9H5U6 513 aa12.66□□□□□ -0.38
SHMT2-204ENST00000553324 BABAM2Q9NXR7 383 aa12.66□□□□□ -0.38
SHMT2-204ENST00000553324 ONECUT1Q9UBC0 465 aa12.66□□□□□ -0.38
SHMT2-204ENST00000553324 IGHV3OR16-10A0A075B7F0 116 aa12.65□□□□□ -0.38
SHMT2-204ENST00000553324 CENPVL3A0A0U1RRI6 287 aa12.65□□□□□ -0.38
SHMT2-204ENST00000553324 H0YJX3 145 aa12.65□□□□□ -0.38
SHMT2-204ENST00000553324 M0R1W7 72 aa12.65□□□□□ -0.38
SHMT2-204ENST00000553324 SFTPBP07988 381 aa12.65□□□□□ -0.38
SHMT2-204ENST00000553324 CHRM2P08172 466 aa12.65□□□□□ -0.38
SHMT2-204ENST00000553324 AZGP1P25311 298 aaKnown RBP12.65□□□□□ -0.38
SHMT2-204ENST00000553324 BAMBIQ13145 260 aa12.65□□□□□ -0.38
SHMT2-204ENST00000553324 SLC25A26Q70HW3 274 aa12.65□□□□□ -0.38
SHMT2-204ENST00000553324 ZDHHC22Q8N966 263 aa12.65□□□□□ -0.38
SHMT2-204ENST00000553324 OR51A4Q8NGJ6 313 aa12.65□□□□□ -0.38
SHMT2-204ENST00000553324 OPALINQ96PE5 141 aa12.65□□□□□ -0.38
SHMT2-204ENST00000553324 SEBOXQ9HB31 216 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-204ENST00000553324 RHOFQ9HBH0 211 aa12.65□□□□□ -0.38
SHMT2-204ENST00000553324 NOX4Q9NPH5 578 aa12.65□□□□□ -0.38
SHMT2-204ENST00000553324 MTCH1Q9NZJ7 389 aa12.65□□□□□ -0.38
SHMT2-204ENST00000553324 CNOT2Q9NZN8 540 aaKnown RBP12.65□□□□□ -0.38
SHMT2-204ENST00000553324 GLS2Q9UI32 602 aa12.65□□□□□ -0.38
SHMT2-204ENST00000553324 DHDHQ9UQ10 334 aa12.65□□□□□ -0.38
SHMT2-204ENST00000553324 IGKV1-27A0A075B6S5 117 aa12.64□□□□□ -0.39
SHMT2-204ENST00000553324 IGKV1-9A0A0C4DH69 117 aa12.64□□□□□ -0.39
SHMT2-204ENST00000553324 A0A1W2PQ09 198 aa12.64□□□□□ -0.39
SHMT2-204ENST00000553324 E9PI62 339 aa12.64□□□□□ -0.39
SHMT2-204ENST00000553324 CLDN34H7C241 214 aa12.64□□□□□ -0.39
SHMT2-204ENST00000553324 PIPP12273 146 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-204ENST00000553324 SELLP14151 372 aa12.64□□□□□ -0.39
SHMT2-204ENST00000553324 PRTN3P24158 256 aa12.64□□□□□ -0.39
SHMT2-204ENST00000553324 ETV1P50549 477 aa12.64□□□□□ -0.39
SHMT2-204ENST00000553324 GUCA2AQ02747 115 aa12.64□□□□□ -0.39
SHMT2-204ENST00000553324 METAP1DQ6UB28 335 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-204ENST00000553324 FGFRL1Q8N441 504 aa12.64□□□□□ -0.39
SHMT2-204ENST00000553324 PARP16Q8N5Y8 322 aa12.64□□□□□ -0.39
SHMT2-204ENST00000553324 CD177Q8N6Q3 437 aa12.64□□□□□ -0.39
SHMT2-204ENST00000553324 OR5D13Q8NGL4 314 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms