RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 HTR1DP28221 377 aa13.53□□□□□ -0.24
VPS29-204ENST00000548259 SLC6A1P30531 599 aa13.53□□□□□ -0.24
VPS29-204ENST00000548259 CEBPDP49716 269 aaPredicted RBP13.53□□□□□ -0.24
VPS29-204ENST00000548259 GP2P55259 537 aaKnown RBP13.53□□□□□ -0.24
VPS29-204ENST00000548259 DGCR2P98153 550 aa13.53□□□□□ -0.24
VPS29-204ENST00000548259 MEF2CQ06413 473 aaPredicted RBP13.53□□□□□ -0.24
VPS29-204ENST00000548259 CGB2Q6NT52 195 aa13.53□□□□□ -0.24
VPS29-204ENST00000548259 ZNF676Q8N7Q3 588 aa13.53□□□□□ -0.24
VPS29-204ENST00000548259 OR4Q3Q8NH05 313 aa13.53□□□□□ -0.24
VPS29-204ENST00000548259 TEX47Q8TBZ9 253 aa13.53□□□□□ -0.24
VPS29-204ENST00000548259 ZNF488Q96MN9 340 aa13.53□□□□□ -0.24
VPS29-204ENST00000548259 NRIP2Q9BQI9 281 aa13.53□□□□□ -0.24
VPS29-204ENST00000548259 ZNF649Q9BS31 505 aa13.53□□□□□ -0.24
VPS29-204ENST00000548259 OR51V1Q9H2C8 321 aa13.53□□□□□ -0.24
VPS29-204ENST00000548259 ARMC1Q9NVT9 282 aa13.53□□□□□ -0.24
VPS29-204ENST00000548259 SLC22A13Q9Y226 551 aa13.53□□□□□ -0.24
VPS29-204ENST00000548259 LYVE1Q9Y5Y7 322 aa13.53□□□□□ -0.24
VPS29-204ENST00000548259 FAM183AA6NL82 134 aa13.52□□□□□ -0.25
VPS29-204ENST00000548259 RAMP3O60896 148 aa13.52□□□□□ -0.25
VPS29-204ENST00000548259 SOX14O95416 240 aa13.52□□□□□ -0.25
VPS29-204ENST00000548259 DOC2BQ14184 412 aa13.52□□□□□ -0.25
VPS29-204ENST00000548259 ABCA11PQ4W5N1 156 aa13.52□□□□□ -0.25
VPS29-204ENST00000548259 KCTD18Q6PI47 426 aaPredicted RBP13.52□□□□□ -0.25
VPS29-204ENST00000548259 MRPL41Q8IXM3 137 aaKnown RBP13.52□□□□□ -0.25
VPS29-204ENST00000548259 CLEC7AQ9BXN2 247 aa13.52□□□□□ -0.25
VPS29-204ENST00000548259 MED20Q9H944 212 aa13.52□□□□□ -0.25
VPS29-204ENST00000548259 LAMP5Q9UJQ1 280 aa13.52□□□□□ -0.25
VPS29-204ENST00000548259 PIGLQ9Y2B2 252 aa13.52□□□□□ -0.25
VPS29-204ENST00000548259 SESN1Q9Y6P5 492 aa13.52□□□□□ -0.25
VPS29-204ENST00000548259 IGHV2-26A0A0B4J1V2 119 aa13.51□□□□□ -0.25
VPS29-204ENST00000548259 TMEM269A0A1B0GVZ9 245 aa13.51□□□□□ -0.25
VPS29-204ENST00000548259 LDLRAD2Q5SZI1 272 aa13.51□□□□□ -0.25
VPS29-204ENST00000548259 DEGS2Q6QHC5 323 aa13.51□□□□□ -0.25
VPS29-204ENST00000548259 OSR2Q8N2R0 312 aa13.51□□□□□ -0.25
VPS29-204ENST00000548259 SLC25A33Q9BSK2 321 aa13.51□□□□□ -0.25
VPS29-204ENST00000548259 PRR23D1E9PI22 279 aaPredicted RBP13.5□□□□□ -0.25
VPS29-204ENST00000548259 OR2F2O95006 317 aa13.5□□□□□ -0.25
VPS29-204ENST00000548259 CCDC159P0C7I6 412 aa13.5□□□□□ -0.25
VPS29-204ENST00000548259 PRR23D2P0DMB1 279 aaPredicted RBP13.5□□□□□ -0.25
VPS29-204ENST00000548259 HSD17B1P14061 328 aa13.5□□□□□ -0.25
VPS29-204ENST00000548259 DMRTC1Q5HYR2 192 aa13.5□□□□□ -0.25
VPS29-204ENST00000548259 CLVS2Q5SYC1 327 aa13.5□□□□□ -0.25
VPS29-204ENST00000548259 OR8H2Q8N162 312 aa13.5□□□□□ -0.25
VPS29-204ENST00000548259 DGCR6LQ9BY27 220 aa13.5□□□□□ -0.25
VPS29-204ENST00000548259 MROQ9BYG7 248 aa13.5□□□□□ -0.25
VPS29-204ENST00000548259 TMEM133Q9H2Q1 129 aa13.5□□□□□ -0.25
VPS29-204ENST00000548259 GPR84Q9NQS5 396 aa13.5□□□□□ -0.25
VPS29-204ENST00000548259 PAPOLBQ9NRJ5 636 aaKnown RBP13.5□□□□□ -0.25
VPS29-204ENST00000548259 DPM3Q9P2X0 92 aa13.5□□□□□ -0.25
VPS29-204ENST00000548259 PSMB11A5LHX3 300 aa13.49□□□□□ -0.25
VPS29-204ENST00000548259 NUDT19A8MXV4 375 aa13.49□□□□□ -0.25
VPS29-204ENST00000548259 H3BN98 237 aa13.49□□□□□ -0.25
VPS29-204ENST00000548259 DLGAP1O14490 977 aa13.49□□□□□ -0.25
VPS29-204ENST00000548259 ARPC2O15144 300 aa13.49□□□□□ -0.25
VPS29-204ENST00000548259 PRODHO43272 600 aa13.49□□□□□ -0.25
VPS29-204ENST00000548259 SELENOFO60613 162 aa13.49□□□□□ -0.25
VPS29-204ENST00000548259 DHRS3O75911 302 aa13.49□□□□□ -0.25
VPS29-204ENST00000548259 THBS3P49746 956 aa13.49□□□□□ -0.25
VPS29-204ENST00000548259 ESRRGP62508 458 aa13.49□□□□□ -0.25
VPS29-204ENST00000548259 ZNF829Q3KNS6 432 aaPredicted RBP13.49□□□□□ -0.25
VPS29-204ENST00000548259 C9orf152Q5JTZ5 239 aa13.49□□□□□ -0.25
VPS29-204ENST00000548259 OR52W1Q6IF63 320 aa13.49□□□□□ -0.25
VPS29-204ENST00000548259 PLBD1Q6P4A8 553 aa13.49□□□□□ -0.25
VPS29-204ENST00000548259 ASRGL1Q7L266 308 aa13.49□□□□□ -0.25
VPS29-204ENST00000548259 TRPM8Q7Z2W7 1104 aa13.49□□□□□ -0.25
VPS29-204ENST00000548259 ZNF596Q8TC21 504 aa13.49□□□□□ -0.25
VPS29-204ENST00000548259 OR51E1Q8TCB6 317 aa13.49□□□□□ -0.25
VPS29-204ENST00000548259 CREB3L1Q96BA8 519 aa13.49□□□□□ -0.25
VPS29-204ENST00000548259 RBM14Q96PK6 669 aaKnown RBP13.49□□□□□ -0.25
VPS29-204ENST00000548259 HES4Q9HCC6 221 aa13.49□□□□□ -0.25
VPS29-204ENST00000548259 VNN3Q9NY84 501 aa13.49□□□□□ -0.25
VPS29-204ENST00000548259 GLS2Q9UI32 602 aa13.49□□□□□ -0.25
VPS29-204ENST00000548259 LINC00312Q9Y6C7 94 aa13.49□□□□□ -0.25
VPS29-204ENST00000548259 DNAH9Q9NYC9 4486 aa13.49□□□□□ -0.25
VPS29-204ENST00000548259 MEX3AA1L020 520 aaKnown RBP13.48□□□□□ -0.25
VPS29-204ENST00000548259 PSMD9O00233 223 aa13.48□□□□□ -0.25
VPS29-204ENST00000548259 E2F6O75461 281 aa13.48□□□□□ -0.25
VPS29-204ENST00000548259 JUNBP17275 347 aaPredicted RBP13.48□□□□□ -0.25
VPS29-204ENST00000548259 PEX2P28328 305 aa13.48□□□□□ -0.25
VPS29-204ENST00000548259 PRDX6P30041 224 aa13.48□□□□□ -0.25
VPS29-204ENST00000548259 CEACAM3P40198 252 aa13.48□□□□□ -0.25
VPS29-204ENST00000548259 MYCNOSP40205 109 aa13.48□□□□□ -0.25
VPS29-204ENST00000548259 RPS7P62081 194 aaKnown RBP13.48□□□□□ -0.25
VPS29-204ENST00000548259 EDDM3AQ14507 147 aa13.48□□□□□ -0.25
VPS29-204ENST00000548259 MICAQ29983 383 aa13.48□□□□□ -0.25
VPS29-204ENST00000548259 SLX4IPQ5VYV7 408 aa13.48□□□□□ -0.25
VPS29-204ENST00000548259 RTN4RL2Q86UN3 420 aa13.48□□□□□ -0.25
VPS29-204ENST00000548259 TFAP2CQ92754 450 aa13.48□□□□□ -0.25
VPS29-204ENST00000548259 SNX22Q96L94 193 aa13.48□□□□□ -0.25
VPS29-204ENST00000548259 PBOV1Q9GZY1 135 aa13.48□□□□□ -0.25
VPS29-204ENST00000548259 REEP1Q9H902 201 aa13.48□□□□□ -0.25
VPS29-204ENST00000548259 ZFP57Q9NU63 452 aa13.48□□□□□ -0.25
VPS29-204ENST00000548259 ARGLU1Q9NWB6 273 aaPredicted RBP13.48□□□□□ -0.25
VPS29-204ENST00000548259 FAM206AQ9NX38 181 aa13.48□□□□□ -0.25
VPS29-204ENST00000548259 PQLC2LA1A4F0 135 aa13.47□□□□□ -0.25
VPS29-204ENST00000548259 LEUTXA8MZ59 168 aa13.47□□□□□ -0.25
VPS29-204ENST00000548259 H0YHG0 523 aa13.47□□□□□ -0.25
VPS29-204ENST00000548259 ZNF254O75437 659 aa13.47□□□□□ -0.25
VPS29-204ENST00000548259 ALOX5APP20292 161 aa13.47□□□□□ -0.25
VPS29-204ENST00000548259 MPZP25189 248 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms