RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 SSBP4Q9BWG4 385 aaPredicted RBP6.89□□□□□ -1.31
USP28-215ENST00000545608 PBOV1Q9GZY1 135 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 MEGF9Q9H1U4 602 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 GPR84Q9NQS5 396 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 C19orf12Q9NSK7 152 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 TVP23BQ9NYZ1 205 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 FBLN5Q9UBX5 448 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 COPS3Q9UNS2 423 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 NOTCH1P46531 2555 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 A0A0G2JK05 382 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 ACOD1A6NK06 481 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 OR5B21A6NL26 309 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 RFPL4AA6NLU0 287 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 AQP12BA6NM10 295 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 RFPL4AL1F8VTS6 287 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 GSC2O15499 205 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 SYNGR1O43759 233 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 ANGPTL7O43827 346 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 E2F6O75461 281 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 MTRF1O75570 445 aaKnown RBP6.88□□□□□ -1.31
USP28-215ENST00000545608 CSF1P09603 554 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 ANXA8P13928 327 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 ATP6V1B1P15313 513 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 FAHP16930 419 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 GABRA5P31644 462 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 CEBPDP49716 269 aaPredicted RBP6.88□□□□□ -1.31
USP28-215ENST00000545608 CAPZA1P52907 286 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 RIPPLY1Q0D2K3 151 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 HERPUD1Q15011 391 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 SNAPC1Q16533 368 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 PLCXD3Q63HM9 321 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 TMEM200BQ69YZ2 307 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 KCTD18Q6PI47 426 aaPredicted RBP6.88□□□□□ -1.31
USP28-215ENST00000545608 CRIP3Q6Q6R5 217 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 DEGS2Q6QHC5 323 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 ACP7Q6ZNF0 438 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 THAP5Q7Z6K1 395 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 COMMD2Q86X83 199 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 AQP12AQ8IXF9 295 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 CD177Q8N6Q3 437 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 OR51G2Q8NGK0 314 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 OR5D13Q8NGL4 314 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 OR8B4Q96RC9 309 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 TTTY10Q9BZA0 68 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 ZNF556Q9HAH1 456 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 SLC25A19Q9HC21 320 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 FOXJ3Q9UPW0 622 aa6.88□□□□□ -1.31
USP28-215ENST00000545608 SMIM31A0A1B0GVY4 71 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 MAGEB4O15481 346 aaPredicted RBP6.87□□□□□ -1.31
USP28-215ENST00000545608 ZNF254O75437 659 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 SRSF10O75494 262 aaKnown RBP6.87□□□□□ -1.31
USP28-215ENST00000545608 NRASP01111 189 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 TTRP02766 147 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 CCL3L1P16619 93 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 PRDX2P32119 198 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 KIR2DS4P43632 304 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 RIDAP52758 137 aaKnown RBP6.87□□□□□ -1.31
USP28-215ENST00000545608 EFNB2P52799 333 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 CRISP1P54107 249 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 ROM1Q03395 351 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 MFGE8Q08431 387 aaPredicted RBP6.87□□□□□ -1.31
USP28-215ENST00000545608 TMED1Q13445 227 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 C2orf68Q2NKX9 166 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 LRRC75BQ2VPJ9 315 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 BCDIN3DQ7Z5W3 292 aaKnown RBP6.87□□□□□ -1.31
USP28-215ENST00000545608 ZNF679Q8IYX0 411 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 BATF2Q8N1L9 274 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 C11orf44Q8N8P7 122 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 POC1AQ8NBT0 407 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 OR4M1Q8NGD0 313 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 OR2T27Q8NH04 317 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 OR5K1Q8NHB7 308 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 PIFOQ8TCI5 191 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 ZNF184Q99676 751 aaPredicted RBP6.87□□□□□ -1.31
USP28-215ENST00000545608 APOL4Q9BPW4 351 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 MROQ9BYG7 248 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 FAM234AQ9H0X4 552 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 C1orf21Q9H246 121 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 GPR173Q9NS66 373 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 RASL12Q9NYN1 266 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 NUFIP1Q9UHK0 495 aaKnown RBP6.87□□□□□ -1.31
USP28-215ENST00000545608 ENPP5Q9UJA9 477 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 IKZF2Q9UKS7 526 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 PIGLQ9Y2B2 252 aa6.87□□□□□ -1.31
USP28-215ENST00000545608 A0A1B0GTI1 187 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 A6NIN4 97 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 G3V4G9 280 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 J3QT63 122 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 GYG2O15488 501 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 CHST1O43916 411 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 PRKYO43930 277 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 PFDN1O60925 122 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 NOS1APO75052 506 aaPredicted RBP6.86□□□□□ -1.31
USP28-215ENST00000545608 FKBP6O75344 327 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 DHRS3O75911 302 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 PGA5P0DJD9 388 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 COX7A1P24310 79 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 HAAOP46952 286 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 DAPP51397 102 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 PSMD7P51665 324 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms