RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 OR51B6Q9H340 312 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 MOB1AQ9H8S9 216 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 PROK2Q9HC23 129 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 TRBV6-7A0A0A0MS04 114 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 IGHV3-64DA0A0J9YX35 117 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 NPIPB13A6NJU9 1138 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 NPIPB4C9JG80 1138 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 ATXN7O15265 892 aaPredicted RBP13.09□□□□□ -0.31
USP28-214ENST00000545540 TNFSF12O43508 249 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 SCGNO76038 276 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 UMODP07911 640 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 FAM89BQ8N5H3 189 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 DNASE2BQ8WZ79 361 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 EMG1Q92979 244 aaKnown RBP13.09□□□□□ -0.31
USP28-214ENST00000545540 TMEM100Q9NV29 134 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 SEMA5BQ9P283 1151 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 SVILO95425 2214 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 TP53I11O14683 189 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 CXCL13O43927 109 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 SNRNP70P08621 437 aaKnown RBP13.09□□□□□ -0.31
USP28-214ENST00000545540 ZNF32P17041 273 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 F2RL1P55085 397 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 TAS2R46P59540 309 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 KMT5CQ86Y97 462 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 SSC4DQ8WTU2 575 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 SLC25A43Q8WUT9 341 aaPredicted RBP13.09□□□□□ -0.31
USP28-214ENST00000545540 HS3ST6Q96QI5 342 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 CLCC1Q96S66 551 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 CNTNAP3Q9BZ76 1288 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 CHST5Q9GZS9 411 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 MAGT1Q9H0U3 335 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 MMP26Q9NRE1 261 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 A0A096LPE4 126 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 A0A1W2PPZ6 126 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 SGCEO43556 437 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 NAT2P11245 290 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 HTR5AP47898 357 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 NPBWR2P48146 333 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 RGS19P49795 217 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 ABCA11PQ4W5N1 156 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 FAM76BQ5HYJ3 339 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 VASH2Q86V25 355 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 OR14L1PQ8NHC6 308 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 ADAMTS17Q8TE56 1095 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 ZNF845Q96IR2 970 aaPredicted RBP13.09□□□□□ -0.31
USP28-214ENST00000545540 IP6K3Q96PC2 410 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 ANXA10Q9UJ72 324 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 PRELID3BQ9Y3B1 194 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 HDGFL3Q9Y3E1 203 aa13.09□□□□□ -0.31
USP28-214ENST00000545540 ZNF587BE7ETH6 402 aa13.08□□□□□ -0.32
USP28-214ENST00000545540 PDGFBP01127 241 aaPredicted RBP13.08□□□□□ -0.32
USP28-214ENST00000545540 PRF1P14222 555 aa13.08□□□□□ -0.32
USP28-214ENST00000545540 OTX2P32243 289 aa13.08□□□□□ -0.32
USP28-214ENST00000545540 CLINT1Q14677 625 aa13.08□□□□□ -0.32
USP28-214ENST00000545540 PNLIPRP3Q17RR3 467 aa13.08□□□□□ -0.32
USP28-214ENST00000545540 SLC25A53Q5H9E4 307 aa13.08□□□□□ -0.32
USP28-214ENST00000545540 WIPI1Q5MNZ9 446 aaPredicted RBP13.08□□□□□ -0.32
USP28-214ENST00000545540 RTN4IP1Q8WWV3 396 aaPredicted RBP13.08□□□□□ -0.32
USP28-214ENST00000545540 WFDC1Q9HC57 220 aa13.08□□□□□ -0.32
USP28-214ENST00000545540 RPS10P5Q9NQ39 176 aa13.08□□□□□ -0.32
USP28-214ENST00000545540 RCC2Q9P258 522 aaKnown RBP13.08□□□□□ -0.32
USP28-214ENST00000545540 FBLN5Q9UBX5 448 aa13.08□□□□□ -0.32
USP28-214ENST00000545540 DOCK10Q96BY6 2186 aa13.08□□□□□ -0.32
USP28-214ENST00000545540 SPENQ96T58 3664 aaKnown RBP13.08□□□□□ -0.32
USP28-214ENST00000545540 MEX3AA1L020 520 aaKnown RBP13.08□□□□□ -0.32
USP28-214ENST00000545540 OR7C1O76099 320 aaPredicted RBP13.08□□□□□ -0.32
USP28-214ENST00000545540 MBPP02686 304 aaPredicted RBP13.08□□□□□ -0.32
USP28-214ENST00000545540 EPHA8P29322 1005 aaPredicted RBP13.08□□□□□ -0.32
USP28-214ENST00000545540 GSK3AP49840 483 aa13.08□□□□□ -0.32
USP28-214ENST00000545540 H3F3AP84243 136 aa13.08□□□□□ -0.32
USP28-214ENST00000545540 IGSF11Q5DX21 431 aa13.08□□□□□ -0.32
USP28-214ENST00000545540 C14orf79Q96F83 325 aa13.08□□□□□ -0.32
USP28-214ENST00000545540 AQP10Q96PS8 301 aa13.08□□□□□ -0.32
USP28-214ENST00000545540 MRPS17Q9Y2R5 130 aaKnown RBP13.08□□□□□ -0.32
USP28-214ENST00000545540 HS3ST3B1Q9Y662 390 aa13.08□□□□□ -0.32
USP28-214ENST00000545540 PRH1P02810 166 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 CCL1P22362 96 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 FADS6Q8N9I5 356 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 MAFAQ8NHW3 353 aaPredicted RBP13.07□□□□□ -0.32
USP28-214ENST00000545540 ABHD3Q8WU67 409 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 C12orf57Q99622 126 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 EIF5A2Q9GZV4 153 aaKnown RBP13.07□□□□□ -0.32
USP28-214ENST00000545540 C1orf123Q9NWV4 160 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 IL36RNQ9UBH0 155 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 FBXO7Q9Y3I1 522 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 ONECUT2O95948 504 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 SUCLG1P53597 346 aaKnown RBP13.07□□□□□ -0.32
USP28-214ENST00000545540 ZNF92Q03936 586 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 SWI5Q1ZZU3 235 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 MIDNQ504T8 468 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 OR10AD1Q8NGE0 317 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 IFI44Q8TCB0 444 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 BORCS8Q96FH0 119 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 PRRX2Q99811 253 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 CHRDQ9H2X0 955 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 ST3GAL6Q9Y274 331 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 FOXI3A8MTJ6 420 aaPredicted RBP13.07□□□□□ -0.32
USP28-214ENST00000545540 K7ESF4 209 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 GLAP06280 429 aa13.07□□□□□ -0.32
USP28-214ENST00000545540 RPS19BP1Q86WX3 136 aaKnown RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms