RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	ISOC1	Q96CN7	298 aa		10.09	□□□□□ -0.79
CAPN1-223	ENST00000533079	YIPF6	Q96EC8	236 aa		10.09	□□□□□ -0.79
CAPN1-223	ENST00000533079	MED30	Q96HR3	178 aa		10.09	□□□□□ -0.79
CAPN1-223	ENST00000533079	GPR61	Q9BZJ8	451 aa		10.09	□□□□□ -0.79
CAPN1-223	ENST00000533079	AMBN	Q9NP70	447 aa		10.09	□□□□□ -0.79
CAPN1-223	ENST00000533079	EXOG	Q9Y2C4	368 aa	Known RBP	10.09	□□□□□ -0.79
CAPN1-223	ENST00000533079	DNAH9	Q9NYC9	4486 aa		10.09	□□□□□ -0.79
CAPN1-223	ENST00000533079	TRBV23-1	A0A0A0MS06	115 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	ANKRD30BL	A7E2S9	258 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	VGLL3	A8MV65	326 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	DCTN6	O00399	190 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	PEX14	O75381	377 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	IFNG	P01579	166 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	CDKN2A	P42771	156 aa	Known RBP	10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	MAP2K4	P45985	399 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	DLX1	P56177	255 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	PRB3	Q04118	309 aa	Predicted RBP	10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	POU4F2	Q12837	409 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	DEFB121	Q5J5C9	76 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	GLYATL3	Q5SZD4	288 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	ZNF367	Q7RTV3	350 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	DPY19L4	Q7Z388	723 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	NAA40	Q86UY6	237 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	ZBTB46	Q86UZ6	589 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	CYB561A3	Q8NBI2	242 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	OR1M1	Q8NGA1	313 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	OR9Q1	Q8NGQ5	310 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	OR2AE1	Q8NHA4	323 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	TSSK2	Q96PF2	358 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	NKX3-1	Q99801	234 aa	Predicted RBP	10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	WNT10A	Q9GZT5	417 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	TLNRD1	Q9H1K6	362 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	ISYNA1	Q9NPH2	558 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	HAO2	Q9NYQ3	351 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	DNAJC27	Q9NZQ0	273 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	H2AFY2	Q9P0M6	372 aa	Predicted RBP	10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	SLC25A10	Q9UBX3	287 aa	Predicted RBP	10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	WARS2	Q9UGM6	360 aa	Known RBP	10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	PITPNC1	Q9UKF7	332 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	B9D1	Q9UPM9	204 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	ERGIC3	Q9Y282	383 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	IER3IP1	Q9Y5U9	82 aa		10.08	□□□□□ -0.8
CAPN1-223	ENST00000533079	CCDC160	A6NGH7	325 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079		M0R129	80 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	ANGPTL7	O43827	346 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	FADS2	O95864	444 aa	Known RBP	10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	REN	P00797	406 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	PF4	P02776	101 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	PF4V1	P10720	104 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	EGFEM1P	Q0D2K5	195 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	GPR107	Q5VW38	600 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	HCP5	Q6MZN7	132 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	CCBE1	Q6UXH8	406 aa	Predicted RBP	10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	ZNF788	Q6ZQV5	615 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	MEPCE	Q7L2J0	689 aa	Known RBP	10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	WDR86	Q86TI4	376 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	EGFL6	Q8IUX8	553 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	C11orf53	Q8IXP5	236 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	OR6V1	Q8N148	313 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	NANOGP1	Q8N7R0	232 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	OR52I1	Q8NGK6	324 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	SPSB4	Q96A44	273 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	LGALS12	Q96DT0	336 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	AJUBA	Q96IF1	538 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	MAP6	Q96JE9	813 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	DDO	Q99489	341 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	TSC22D3	Q99576	134 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	IFT27	Q9BW83	186 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	FUNDC2	Q9BWH2	189 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	ENPP5	Q9UJA9	477 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	EXOSC1	Q9Y3B2	195 aa	Known RBP	10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079	LRP12	Q9Y561	859 aa		10.07	□□□□□ -0.8
CAPN1-223	ENST00000533079		A0A1W2PPH5	198 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	MEGF11	A6BM72	1044 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	RIIAD1	A6NNX1	92 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079		H3BMQ9	156 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079		J3QRE1	110 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	SIGLEC5	O15389	551 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	NOL3	O60936	208 aa	Known RBP	10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	GLCE	O94923	617 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	GABARAP	O95166	117 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	ZNF3	P17036	446 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	BMX	P51813	675 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	LSAMP	Q13449	338 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	CNN3	Q15417	329 aa	Known RBP	10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	CPO	Q8IVL8	374 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	FTMT	Q8N4E7	242 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	OR10Z1	Q8NGY1	313 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	PIFO	Q8TCI5	191 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	C17orf50	Q8WW18	174 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	DPF1	Q92782	380 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	RNFT2	Q96EX2	444 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	GAFA1	Q96PS6	74 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	MND1	Q9BWT6	205 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	YIPF3	Q9GZM5	350 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	PRSS22	Q9GZN4	317 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	HEXA-AS1	Q9H8Q6	139 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	INPP5E	Q9NRR6	644 aa		10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	CHCHD3	Q9NX63	227 aa	Known RBP	10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	TCF19	Q9Y242	345 aa		10.06	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms