RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 SSX1Q16384 188 aa12.09□□□□□ -0.47
CPSF1-206ENST00000531480 ATPAF1Q5TC12 328 aaPredicted RBP12.09□□□□□ -0.47
CPSF1-206ENST00000531480 USP43Q70EL4 1123 aa12.09□□□□□ -0.47
CPSF1-206ENST00000531480 ANGPTL5Q86XS5 388 aa12.09□□□□□ -0.47
CPSF1-206ENST00000531480 OR51A2Q8NGJ7 313 aa12.09□□□□□ -0.47
CPSF1-206ENST00000531480 TRMT10AQ8TBZ6 339 aaKnown RBP12.09□□□□□ -0.47
CPSF1-206ENST00000531480 NPRL2Q8WTW4 380 aa12.09□□□□□ -0.47
CPSF1-206ENST00000531480 TMIGD2Q96BF3 282 aa12.09□□□□□ -0.47
CPSF1-206ENST00000531480 RAB39BQ96DA2 213 aa12.09□□□□□ -0.47
CPSF1-206ENST00000531480 POM121Q96HA1 1249 aa12.09□□□□□ -0.47
CPSF1-206ENST00000531480 GAL3ST1Q99999 423 aa12.09□□□□□ -0.47
CPSF1-206ENST00000531480 NEK6Q9HC98 313 aa12.09□□□□□ -0.47
CPSF1-206ENST00000531480 TAS2R4Q9NYW5 299 aa12.09□□□□□ -0.47
CPSF1-206ENST00000531480 FOXJ3Q9UPW0 622 aa12.09□□□□□ -0.47
CPSF1-206ENST00000531480 TRDV1A0A1B0GX56 115 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 A8MXK9 166 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 FAM157AC9JC47 383 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 AKR7A2O43488 359 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 GABARAPO95166 117 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 ZNF205O95201 554 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 HEXAP06865 529 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 RAB3AP20336 220 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 CD80P33681 288 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 PSMD7P51665 324 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 MTCP1P56278 107 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 ZP1P60852 638 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 PDZK1IP1Q13113 114 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 ACSM3Q53FZ2 586 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 STUMQ69YW2 141 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 CD200R1LQ6Q8B3 271 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 TMEM91Q6ZNR0 172 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 RNF144BQ7Z419 303 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 LYPD6Q86Y78 171 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 CROCCP3Q8IVE0 287 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 SAXO1Q8IYX7 474 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 MSI2Q96DH6 328 aaKnown RBP12.08□□□□□ -0.48
CPSF1-206ENST00000531480 KCTD7Q96MP8 289 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 DNTTIP1Q9H147 329 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 SLITRK2Q9H156 845 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 WDR13Q9H1Z4 485 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 NARFLQ9H6Q4 476 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 SEBOXQ9HB31 216 aaPredicted RBP12.08□□□□□ -0.48
CPSF1-206ENST00000531480 EXOSC4Q9NPD3 245 aaKnown RBP12.08□□□□□ -0.48
CPSF1-206ENST00000531480 TMEM138Q9NPI0 162 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 MTCH1Q9NZJ7 389 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 MIOXQ9UGB7 285 aa12.08□□□□□ -0.48
CPSF1-206ENST00000531480 TRAV8-7A0A075B6U6 113 aa12.07□□□□□ -0.48
CPSF1-206ENST00000531480 ISPDA4D126 451 aa12.07□□□□□ -0.48
CPSF1-206ENST00000531480 B4DSR2 109 aa12.07□□□□□ -0.48
CPSF1-206ENST00000531480 C3orf80F5H4A9 247 aa12.07□□□□□ -0.48
CPSF1-206ENST00000531480 TMEM127O75204 238 aa12.07□□□□□ -0.48
CPSF1-206ENST00000531480 RGS9O75916 674 aaPredicted RBP12.07□□□□□ -0.48
CPSF1-206ENST00000531480 LY6G6DO95868 133 aa12.07□□□□□ -0.48
CPSF1-206ENST00000531480 UCHL1P09936 223 aa12.07□□□□□ -0.48
CPSF1-206ENST00000531480 CD37P11049 281 aa12.07□□□□□ -0.48
CPSF1-206ENST00000531480 AMY2BP19961 511 aa12.07□□□□□ -0.48
CPSF1-206ENST00000531480 FGF9P31371 208 aaPredicted RBP12.07□□□□□ -0.48
CPSF1-206ENST00000531480 TGFBR2P37173 567 aa12.07□□□□□ -0.48
CPSF1-206ENST00000531480 KISS1Q15726 138 aa12.07□□□□□ -0.48
CPSF1-206ENST00000531480 MICBQ29980 383 aa12.07□□□□□ -0.48
CPSF1-206ENST00000531480 CYB5R2Q6BCY4 276 aa12.07□□□□□ -0.48
CPSF1-206ENST00000531480 SFRP4Q6FHJ7 346 aaPredicted RBP12.07□□□□□ -0.48
CPSF1-206ENST00000531480 ASCL4Q6XD76 172 aa12.07□□□□□ -0.48
CPSF1-206ENST00000531480 ZNF841Q6ZN19 808 aa12.07□□□□□ -0.48
CPSF1-206ENST00000531480 ACP7Q6ZNF0 438 aa12.07□□□□□ -0.48
CPSF1-206ENST00000531480 CDH26Q8IXH8 852 aa12.07□□□□□ -0.48
CPSF1-206ENST00000531480 LINC01356Q8N9X3 169 aa12.07□□□□□ -0.48
CPSF1-206ENST00000531480 ZSCAN4Q8NAM6 433 aaPredicted RBP12.07□□□□□ -0.48
CPSF1-206ENST00000531480 C19orf18Q8NEA5 215 aa12.07□□□□□ -0.48
CPSF1-206ENST00000531480 ANGPTL6Q8NI99 470 aa12.07□□□□□ -0.48
CPSF1-206ENST00000531480 ORAI1Q96D31 301 aa12.07□□□□□ -0.48
CPSF1-206ENST00000531480 RHOFQ9HBH0 211 aa12.07□□□□□ -0.48
CPSF1-206ENST00000531480 ZNF222Q9UK12 451 aa12.07□□□□□ -0.48
CPSF1-206ENST00000531480 PPIAL4CA0A0B4J2A2 164 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 LOC100506127A0A0U1RQW1 187 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 KIAA1324LA8MWY0 1029 aaPredicted RBP12.06□□□□□ -0.48
CPSF1-206ENST00000531480 FCN3O75636 299 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 KDM4BO94953 1096 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 GLRA1P23415 457 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 MYL9P24844 172 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 RPS25P62851 125 aaKnown RBP12.06□□□□□ -0.48
CPSF1-206ENST00000531480 INSL4Q14641 139 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 DGUOKQ16854 277 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 C11orf91Q3C1V1 193 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 LYPD2Q6UXB3 125 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 SLC25A26Q70HW3 274 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 MKXQ8IYA7 352 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 Q8IYB0 196 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 Q8NFD4 153 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 PXT1Q8NFP0 134 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 OR52N4Q8NGI2 321 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 DACT3Q96B18 629 aaPredicted RBP12.06□□□□□ -0.48
CPSF1-206ENST00000531480 SEH1LQ96EE3 360 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 CPNE2Q96FN4 548 aaPredicted RBP12.06□□□□□ -0.48
CPSF1-206ENST00000531480 CEP19Q96LK0 163 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 SPACA5Q96QH8 159 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 CHCHD6Q9BRQ6 235 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 TMED9Q9BVK6 235 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 PPIL3Q9H2H8 161 aaKnown RBP12.06□□□□□ -0.48
CPSF1-206ENST00000531480 NOX4Q9NPH5 578 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms