RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 SAMD5Q5TGI4 173 aa9.2□□□□□ -0.94
VPS28-214ENST00000531032 CCDC121Q6ZUS5 278 aa9.2□□□□□ -0.94
VPS28-214ENST00000531032 AMIGO2Q86SJ2 522 aa9.2□□□□□ -0.94
VPS28-214ENST00000531032 CALHM1Q8IU99 346 aa9.2□□□□□ -0.94
VPS28-214ENST00000531032 DTX3Q8N9I9 347 aa9.2□□□□□ -0.94
VPS28-214ENST00000531032 UTP4Q969X6 686 aaKnown RBP9.2□□□□□ -0.94
VPS28-214ENST00000531032 PPP1R14AQ96A00 147 aa9.2□□□□□ -0.94
VPS28-214ENST00000531032 CNN2Q99439 309 aaKnown RBP9.2□□□□□ -0.94
VPS28-214ENST00000531032 MOB1AQ9H8S9 216 aa9.2□□□□□ -0.94
VPS28-214ENST00000531032 HES4Q9HCC6 221 aa9.2□□□□□ -0.94
VPS28-214ENST00000531032 IKZF2Q9UKS7 526 aa9.2□□□□□ -0.94
VPS28-214ENST00000531032 M0R129 80 aa9.19□□□□□ -0.94
VPS28-214ENST00000531032 MITFO75030 526 aaPredicted RBP9.19□□□□□ -0.94
VPS28-214ENST00000531032 NXPH2O95156 264 aa9.19□□□□□ -0.94
VPS28-214ENST00000531032 TK1P04183 234 aa9.19□□□□□ -0.94
VPS28-214ENST00000531032 CCL3L1P16619 93 aa9.19□□□□□ -0.94
VPS28-214ENST00000531032 COX7A1P24310 79 aa9.19□□□□□ -0.94
VPS28-214ENST00000531032 MPZP25189 248 aa9.19□□□□□ -0.94
VPS28-214ENST00000531032 DLX6P56179 175 aa9.19□□□□□ -0.94
VPS28-214ENST00000531032 LGALS4P56470 323 aa9.19□□□□□ -0.94
VPS28-214ENST00000531032 ERVFRD-1P60508 538 aa9.19□□□□□ -0.94
VPS28-214ENST00000531032 ERVK11-1P61568 191 aa9.19□□□□□ -0.94
VPS28-214ENST00000531032 HIST2H2BDQ6DRA6 164 aa9.19□□□□□ -0.94
VPS28-214ENST00000531032 Q6ZSR3 168 aa9.19□□□□□ -0.94
VPS28-214ENST00000531032 Q8N2B8 174 aa9.19□□□□□ -0.94
VPS28-214ENST00000531032 C11orf44Q8N8P7 122 aa9.19□□□□□ -0.94
VPS28-214ENST00000531032 OR4M1Q8NGD0 313 aa9.19□□□□□ -0.94
VPS28-214ENST00000531032 OR2T27Q8NH04 317 aa9.19□□□□□ -0.94
VPS28-214ENST00000531032 CDCA4Q9BXL8 241 aa9.19□□□□□ -0.94
VPS28-214ENST00000531032 TTTY10Q9BZA0 68 aa9.19□□□□□ -0.94
VPS28-214ENST00000531032 GABARAPL1Q9H0R8 117 aa9.19□□□□□ -0.94
VPS28-214ENST00000531032 RIBC2Q9H4K1 309 aa9.19□□□□□ -0.94
VPS28-214ENST00000531032 ZNF702PQ9H963 129 aa9.19□□□□□ -0.94
VPS28-214ENST00000531032 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.19□□□□□ -0.94
VPS28-214ENST00000531032 GTF2A1LQ9UNN4 478 aa9.19□□□□□ -0.94
VPS28-214ENST00000531032 V9GYS6 101 aa9.19□□□□□ -0.94
VPS28-214ENST00000531032 A0A1B0GTI1 187 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 SAC3D1A6NKF1 404 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 DHRS7CA6NNS2 312 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 C17orf98A8MV24 154 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 ODF3BA8MYP8 253 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 LOC110117498-PIK3R3F6TDL0 507 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 PRKYO43930 277 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 RBP4P02753 201 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 VSIG10L2P0DP72 767 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 CXCR4P61073 352 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 FBLN7Q53RD9 439 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 SLX4IPQ5VYV7 408 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 ZNF322Q6U7Q0 402 aaPredicted RBP9.18□□□□□ -0.94
VPS28-214ENST00000531032 ZNF782Q6ZMW2 699 aaPredicted RBP9.18□□□□□ -0.94
VPS28-214ENST00000531032 LHFPL4Q7Z7J7 247 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 GID4Q8IVV7 300 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 ELMOD2Q8IZ81 293 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 DYNAPQ8N1N2 210 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 TCEANCQ8N8B7 351 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 OR14K1Q8NGZ2 314 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 MNTQ99583 582 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 PKIBQ9C010 78 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 ADGRL4Q9HBW9 690 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 GPR173Q9NS66 373 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 SERTAD4Q9NUC0 356 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 OR52A1Q9UKL2 312 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 TCF19Q9Y242 345 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 TBL2Q9Y4P3 447 aaKnown RBP9.18□□□□□ -0.94
VPS28-214ENST00000531032 ORC6Q9Y5N6 252 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 R4GMQ9 66 aa9.18□□□□□ -0.94
VPS28-214ENST00000531032 DSCAML1Q8TD84 2053 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 ZAR1LA6NP61 321 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 ZNF670-ZNF695F2Z2N8 137 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 K7N7A8 449 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 MAGEB4O15481 346 aaPredicted RBP9.17□□□□□ -0.94
VPS28-214ENST00000531032 ZNF737O75373 536 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 PIPP12273 146 aaPredicted RBP9.17□□□□□ -0.94
VPS28-214ENST00000531032 CCL1P22362 96 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 ACTR3P61158 418 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 EFNB1P98172 346 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 IL24Q13007 206 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 BCL2L15Q5TBC7 163 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 AADACL4Q5VUY2 407 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 NXNL2Q5VZ03 156 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 ZNF626Q68DY1 528 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 C12orf73Q69YU5 71 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 KDM4DQ6B0I6 523 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 CCBE1Q6UXH8 406 aaPredicted RBP9.17□□□□□ -0.94
VPS28-214ENST00000531032 PLEKHG7Q6ZR37 379 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 ASRGL1Q7L266 308 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 MEPCEQ7L2J0 689 aaKnown RBP9.17□□□□□ -0.94
VPS28-214ENST00000531032 BCDIN3DQ7Z5W3 292 aaKnown RBP9.17□□□□□ -0.94
VPS28-214ENST00000531032 SLC35F2Q8IXU6 374 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 BATF2Q8N1L9 274 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 TMEM163Q8TC26 289 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 WIPF2Q8TF74 440 aaPredicted RBP9.17□□□□□ -0.94
VPS28-214ENST00000531032 PYDC1Q8WXC3 89 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 FOXRED1Q96CU9 486 aaPredicted RBP9.17□□□□□ -0.94
VPS28-214ENST00000531032 CENPNQ96H22 339 aaPredicted RBP9.17□□□□□ -0.94
VPS28-214ENST00000531032 IL4I1Q96RQ9 567 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 NKX3-1Q99801 234 aaPredicted RBP9.17□□□□□ -0.94
VPS28-214ENST00000531032 CIB1Q99828 191 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 APOL4Q9BPW4 351 aa9.17□□□□□ -0.94
VPS28-214ENST00000531032 OR14J1Q9UGF5 321 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms