RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 EXTL1Q92935 676 aa7.43□□□□□ -1.22
LIMCH1-216ENST00000512820 NTNG2Q96CW9 530 aa7.43□□□□□ -1.22
LIMCH1-216ENST00000512820 TVP23CQ96ET8 276 aa7.43□□□□□ -1.22
LIMCH1-216ENST00000512820 GDF15Q99988 308 aa7.43□□□□□ -1.22
LIMCH1-216ENST00000512820 RSRP1Q9BUV0 290 aa7.43□□□□□ -1.22
LIMCH1-216ENST00000512820 TLNRD1Q9H1K6 362 aa7.43□□□□□ -1.22
LIMCH1-216ENST00000512820 OBP2BQ9NPH6 170 aa7.43□□□□□ -1.22
LIMCH1-216ENST00000512820 A0A096LPE4 126 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 A0A1W2PPZ6 126 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 C7orf77A4D0Y5 90 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 BTBD17A6NE02 478 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 TGFBR3LH3BV60 316 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 NPBWR1P48145 328 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 DSCR4P56555 118 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 ERVK-16P61578 105 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 ZP4Q12836 540 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 FZD5Q13467 585 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 TEX30Q5JUR7 227 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 ZNF774Q6NX45 483 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 SSX9Q7RTT3 188 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 ZNF429Q86V71 674 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 CCDC74BQ96LY2 380 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 PTPRDP23468 1912 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 C5orf49A4QMS7 147 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 MFNGO00587 321 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 CBR3O75828 277 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 PSMB3P49720 205 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 IL13RA2Q14627 380 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 SPANXN5Q5MJ07 72 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 ZNF787Q6DD87 383 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 ATRAIDQ6UW56 229 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 CARFQ8N187 725 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 OR2C3Q8N628 320 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 RHBDD1Q8TEB9 315 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 ADIPOR1Q96A54 375 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 EDEM2Q9BV94 578 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 SLC26A1Q9H2B4 701 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 PARP11Q9NR21 331 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 LANCL2Q9NS86 450 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 GAR1Q9NY12 217 aaKnown RBP7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 PISDQ9UG56 409 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 hCG_1809904A0A1W2PP81 198 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 A0A1W2PR64 198 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 A0A1W2PRV1 198 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 ZNF727A8MUV8 499 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 NXPH2O95156 264 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 IAPPP10997 89 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 NXPH1P58417 271 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 TGFBR3Q03167 851 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 RHBDD2Q6NTF9 364 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 GLRX5Q86SX6 157 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 D2HGDHQ8N465 521 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 LRRC75AQ8NAA5 344 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 FOXB1Q99853 325 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 PHF7Q9BWX1 381 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 TGIF2Q9GZN2 237 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 UCK1Q9HA47 277 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 G6PC2Q9NQR9 355 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 PPP1R3CQ9UQK1 317 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 SCN2AQ99250 2005 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 LRP5LA4QPB2 252 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 MPTX1A8MV57 137 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 WDR1O75083 606 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 RAB4BP61018 213 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 CCL7P80098 99 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 DCAF12Q5T6F0 453 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 LINC00518Q8N0U6 118 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 OR13G1Q8NGZ3 307 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 OR6S1Q8NH40 331 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 KCNK17Q96T54 332 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 RAB33BQ9H082 229 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 NLRC5Q86WI3 1866 aa7.42□□□□□ -1.22
LIMCH1-216ENST00000512820 C3orf85A0A1B0GTC6 90 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 ADAM10O14672 748 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 HLA-HP01893 362 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 EDN3P14138 238 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 LSM6P62312 80 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 RPP30P78346 268 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 RAB31Q13636 194 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 CHCHD2P9Q5T1J5 151 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 CADM4Q8NFZ8 388 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 OR5C1Q8NGR4 320 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 TMPRSS5Q9H3S3 457 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 WSB1Q9Y6I7 421 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 ADAM20O43506 726 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 PATE4P0C8F1 98 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 PDLIM3Q53GG5 364 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 OR2T2Q6IF00 324 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 UTP23Q9BRU9 249 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 CABLES2Q9BTV7 478 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 LHX6Q9UPM6 363 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 TRAV14DV4A0A0A6YYC5 116 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 MS4A18H0YCH9 400 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 H7BYZ3 331 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 GPR37O15354 613 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 PDCD6O75340 191 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 ZNF32P17041 273 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 MS4A18Q3C1V0 323 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 ZNF610Q8N9Z0 462 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 KCNE4Q8WWG9 221 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms