RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 SEC14L6B5MCN3 397 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 DISC1C4P0D8 188 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 H3BN98 237 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 SMLR1H3BR10 107 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 TEX46H3BTG2 121 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 CXCR6O00574 342 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 EI24O14681 340 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 SH2D1BO14796 132 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 MSH4O15457 936 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 CYB5BO43169 146 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 MBTPS2O43462 519 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 TGOLN2O43493 480 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 DUX1O43812 170 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 ORC5O43913 435 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 TYROBPO43914 113 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 FAM189A1O60320 539 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 FCMRO60667 390 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 RP2O75695 350 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 IGF2P01344 180 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 CXCL10P02778 98 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 TCRBP04435 133 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 BPGMP07738 259 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 PNMTP11086 282 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 NELFEP18615 380 aaKnown RBP1.37□□□□□ -2.19
NUP54-208ENST00000508604 PGAM1P18669 254 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 SLC2A5P22732 501 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 CD82P27701 267 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 PSMB5P28074 263 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 S100A2P29034 98 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 KDELR2P33947 212 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 DLSTP36957 453 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 MAP2K4P45985 399 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 OR1D4P47884 311 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 STK19P49842 368 aaPredicted RBP1.37□□□□□ -2.19
NUP54-208ENST00000508604 NOVA1P51513 510 aaKnown RBP1.37□□□□□ -2.19
NUP54-208ENST00000508604 TDGF1P3P51864 188 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 ZNF136P52737 540 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 CDKN2DP55273 166 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 BIDP55957 195 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 MLF1P58340 268 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 KRTAP12-3P60328 96 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 FAM3AP98173 230 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 AESQ08117 197 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 ZNF616Q08AN1 781 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 FABP9Q0Z7S8 132 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 DAZ2Q13117 558 aaKnown RBP1.37□□□□□ -2.19
NUP54-208ENST00000508604 SRSF6Q13247 344 aaKnown RBP1.37□□□□□ -2.19
NUP54-208ENST00000508604 ELAVL3Q14576 367 aaKnown RBP1.37□□□□□ -2.19
NUP54-208ENST00000508604 CYP51A1Q16850 503 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 TMEM176BQ3YBM2 270 aaPredicted RBP1.37□□□□□ -2.19
NUP54-208ENST00000508604 PYCR3Q53H96 274 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 LGSNQ5TDP6 509 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 HIST2H3PS2Q5TEC6 136 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 FAM45BPQ6NSW5 357 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 H3F3CQ6NXT2 135 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 STEAP1BQ6NZ63 245 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 CDC42EP5Q6NZY7 148 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 DNM1P34Q6PK57 102 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 SCIMPQ6UWF3 145 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 ADAMTSL5Q6ZMM2 481 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 ACOT7LQ6ZUV0 252 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 TMEM179Q6ZVK1 233 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 SERPINA9Q86WD7 417 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 FUNDC1Q8IVP5 155 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 BAP18Q8IXM2 172 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 Q8N402 240 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 LRRC52Q8N7C0 313 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 C15orf54Q8N8G6 183 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 FAM71CQ8NEG0 241 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 OR5L2Q8NGL0 311 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 OR9A4Q8NGU2 314 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 OR10K1Q8NGX5 313 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 OR4S2Q8NH73 311 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 OR5AK3PQ8NH89 298 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 OR5K1Q8NHB7 308 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 FAM45AQ8TCE6 357 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 ABHD3Q8WU67 409 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 ORAOV1Q8WV07 137 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 C10orf82Q8WW14 230 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 TMEM239Q8WW34 195 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 ASB17Q8WXJ9 295 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 ASB9Q96DX5 294 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 MALSU1Q96EH3 234 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 CPB2Q96IY4 423 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 SMIM8Q96KF7 97 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 LINC00052Q96N35 136 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 OR5B12Q96R08 314 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 OR52B2Q96RD2 323 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 TSNAXQ99598 290 aaKnown RBP1.37□□□□□ -2.19
NUP54-208ENST00000508604 KLF6Q99612 283 aaPredicted RBP1.37□□□□□ -2.19
NUP54-208ENST00000508604 SPAG8Q99932 426 aaPredicted RBP1.37□□□□□ -2.19
NUP54-208ENST00000508604 TMEM121Q9BTD3 319 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 RSG1Q9BU20 258 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 WRAP53Q9BUR4 548 aaKnown RBP1.37□□□□□ -2.19
NUP54-208ENST00000508604 ALG12Q9BV10 488 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 TBL1XR1Q9BZK7 514 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 FAM96AQ9H5X1 160 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 SGK2Q9HBY8 427 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 C6orf50Q9HD87 102 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 DAZ3Q9NR90 486 aaKnown RBP1.37□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms