RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 MICBQ29980 383 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 MS4A18Q3C1V0 323 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 GGNBP1Q5YKI7 109 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 DYNLRB1Q9NP97 96 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 WDR1O75083 606 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 VSIG10L2P0DP72 767 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 SLC25A4P12235 298 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 EIF2S3LQ2VIR3 472 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 ZNF766Q5HY98 468 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 C1orf100Q5SVJ3 147 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 OR8G2PQ6IF36 304 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 ZFP62Q8NB50 900 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 NDRG3Q9UGV2 375 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 IGHV1-45A0A0A0MS14 117 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 AGFG1P52594 562 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 CST9LP1Q5W188 147 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 C20orf196Q8IYI0 205 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 TMEM38BQ9NVV0 291 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 VSIG4Q9Y279 399 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 DOCK6Q96HP0 2047 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 C3orf85A0A1B0GTC6 90 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 BTBD17A6NE02 478 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 NPIPB13A6NJU9 1138 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 NPIPB4C9JG80 1138 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 KITLGP21583 273 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 IL13RA2Q14627 380 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 CLRN3Q8NCR9 226 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 BTF3L4Q96K17 158 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 ZNF75AQ96N20 296 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 CDX2Q99626 313 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 A0A0U1RQV5 110 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 ZFP92A6NM28 416 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 ZNF724A8MTY0 619 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 EFNB1P98172 346 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 ZNF718Q3SXZ3 478 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 SP6Q3SY56 376 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 CXorf58Q96LI9 332 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 UHRF2Q96PU4 802 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 C1QTNF6Q9BXI9 259 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 OR2H1Q9GZK4 316 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 C19orf12Q9NSK7 152 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 LAMP3Q9UQV4 416 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 LRRC30A6NM36 301 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 PRSS44E7EML9 344 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 RNASEK-C17orf49H0YIS7 233 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 TGFBR3LH3BV60 316 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 RAB27BO00194 218 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 PNPP00491 289 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 LINC00271P0C7V0 271 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 NFYBP25208 207 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 LIMK1P53667 647 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 PJVKQ0ZLH3 352 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 HNF4GQ14541 408 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 UCN2Q96RP3 112 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 PSENENQ9NZ42 101 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 A0A0G2JK05 382 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 LYPD3O95274 346 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 HLA-HP01893 362 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 FGF5P12034 268 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 OR2A2Q6IF42 318 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 SLC25A47Q6Q0C1 308 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 IGKV3D-11A0A0A0MRZ8 115 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 EFSO43281 561 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 SFTA3P0C7M3 94 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 HOGA1Q86XE5 327 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 SLC35G3Q8N808 338 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 BVESQ8NE79 360 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 OR1J1Q8NGS3 322 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 TAAR6Q96RI8 345 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 ADAT1Q9BUB4 502 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 C20orf24Q9BUV8 137 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 ANGPTL4Q9BY76 406 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 HEYLQ9NQ87 328 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 STARD10Q9Y365 291 aa9.48□□□□□ -0.89
LIMCH1-205ENST00000503057 OR5B21A6NL26 309 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 C21orf140B9A014 251 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 J3QRE1 110 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 CYB5BO43169 146 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 OR5AC1P0C628 307 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 DTYMKP23919 212 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 SMIM21Q3B7S5 101 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 FAM58AQ8N1B3 248 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 ADAD2Q8NCV1 583 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 ST7LQ8TDW4 575 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 GALMQ96C23 342 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 CIB3Q96Q77 187 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 MAGT1Q9H0U3 335 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 GPR35Q9HC97 309 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 UFSP2Q9NUQ7 469 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 B4E171 279 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 PATE4P0C8F1 98 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 TSPAN7P41732 249 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 PLGLAQ15195 96 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 SPANXN5Q5MJ07 72 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 HIST2H3PS2Q5TEC6 136 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 SPINK14Q6IE38 97 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 MPC1Q9Y5U8 109 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 TANC1Q9C0D5 1861 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 TMEM30CPA0ZSE6 113 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 GPR12P47775 334 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms