RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 TEX37Q96LM6 180 aa3.15□□□□□ -1.91
USP54-217ENST00000498213 PPP1R36Q96LQ0 422 aa3.15□□□□□ -1.91
USP54-217ENST00000498213 WDFY2Q96P53 400 aa3.15□□□□□ -1.91
USP54-217ENST00000498213 OR4F4Q96R69 305 aa3.15□□□□□ -1.91
USP54-217ENST00000498213 GPX7Q96SL4 187 aaPredicted RBP3.15□□□□□ -1.91
USP54-217ENST00000498213 SH3GL3Q99963 347 aa3.15□□□□□ -1.91
USP54-217ENST00000498213 FAM110AQ9BQ89 295 aa3.15□□□□□ -1.91
USP54-217ENST00000498213 NUDT16L1Q9BRJ7 211 aaKnown RBP3.15□□□□□ -1.91
USP54-217ENST00000498213 FUZQ9BT04 418 aa3.15□□□□□ -1.91
USP54-217ENST00000498213 EMC6Q9BV81 110 aa3.15□□□□□ -1.91
USP54-217ENST00000498213 RGCCQ9H4X1 137 aa3.15□□□□□ -1.91
USP54-217ENST00000498213 KAT8Q9H7Z6 458 aaKnown RBP3.15□□□□□ -1.91
USP54-217ENST00000498213 TMEM165Q9HC07 324 aa3.15□□□□□ -1.91
USP54-217ENST00000498213 SAR1AQ9NR31 198 aa3.15□□□□□ -1.91
USP54-217ENST00000498213 POLE4Q9NR33 117 aa3.15□□□□□ -1.91
USP54-217ENST00000498213 TMEM100Q9NV29 134 aa3.15□□□□□ -1.91
USP54-217ENST00000498213 CHCHD3Q9NX63 227 aaKnown RBP3.15□□□□□ -1.91
USP54-217ENST00000498213 UBAP1Q9NZ09 502 aa3.15□□□□□ -1.91
USP54-217ENST00000498213 SLC25A10Q9UBX3 287 aaPredicted RBP3.15□□□□□ -1.91
USP54-217ENST00000498213 RPS6KA6Q9UK32 745 aa3.15□□□□□ -1.91
USP54-217ENST00000498213 VPREB3Q9UKI3 123 aa3.15□□□□□ -1.91
USP54-217ENST00000498213 PRPF19Q9UMS4 504 aaKnown RBP3.15□□□□□ -1.91
USP54-217ENST00000498213 FOXJ3Q9UPW0 622 aa3.15□□□□□ -1.91
USP54-217ENST00000498213 NDUFAF1Q9Y375 327 aa3.15□□□□□ -1.91
USP54-217ENST00000498213 UGT2A1Q9Y4X1 527 aa3.15□□□□□ -1.91
USP54-217ENST00000498213 TET2Q6N021 2002 aaPredicted RBP3.14□□□□□ -1.91
USP54-217ENST00000498213 LOC100509620A0A075B734 347 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 TRAV40A0A0B4J280 105 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 IGHV1-69DA0A0B4J2H0 117 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 ZNF816-ZNF321PA0A0X1KG74 233 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 A0A1B0GW55 424 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 PRSS37A4D1T9 235 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 VGLL3A8MV65 326 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 BLOC1S5-TXNDC5H3BN57 136 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 M0QX08 132 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 M0R1W7 72 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 LGALS8O00214 317 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 ANGPT2O15123 496 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 SPINT2O43291 252 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 ANGPTL7O43827 346 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 GPR137BO60478 399 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 KHDRBS3O75525 346 aaKnown RBP3.14□□□□□ -1.91
USP54-217ENST00000498213 GLCEO94923 617 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 TXNDC12O95881 172 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 IGHV1-69P01742 117 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 CD14P08571 375 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 HOXB5P09067 269 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 DUX4L2P0CJ85 424 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 DUX4L3P0CJ86 424 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 DUX4L5P0CJ88 424 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 DUX4L6P0CJ89 424 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 DUX4L7P0CJ90 424 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 TROVE2P10155 538 aaKnown RBP eCLIP3.14□□□□□ -1.91
USP54-217ENST00000498213 MMP9P14780 707 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 MYOD1P15172 320 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 CCNOP22674 350 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 LAP3P28838 519 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 WNT5AP41221 380 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 NAA10P41227 235 aaPredicted RBP3.14□□□□□ -1.91
USP54-217ENST00000498213 SMIM11AP58511 58 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 ISL1P61371 349 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 ERVK11-1P61568 191 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 VAMP2P63027 116 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 HIST1H3AP68431 136 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 SPIBQ01892 262 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 CD47Q08722 323 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 COX10Q12887 443 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 MAPRE2Q15555 327 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 TSTQ16762 297 aaKnown RBP3.14□□□□□ -1.91
USP54-217ENST00000498213 DUSP7Q16829 419 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 CYP51A1Q16850 503 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 TMEM95Q3KNT9 176 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 C6orf141Q5SZD1 244 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 HIST2H3PS2Q5TEC6 136 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 TEX36Q5VZQ5 186 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 SIGIRRQ6IA17 410 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 DHRS7BQ6IAN0 325 aaPredicted RBP3.14□□□□□ -1.91
USP54-217ENST00000498213 RPL13AP3Q6NVV1 102 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 DUX4L9Q6RFH8 374 aaPredicted RBP3.14□□□□□ -1.91
USP54-217ENST00000498213 RFPL4BQ6ZWI9 263 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 HIST2H3AQ71DI3 136 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 ASRGL1Q7L266 308 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 KRT74Q7RTS7 529 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 OFCC1Q8IZS5 231 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 CLDN22Q8N7P3 220 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 OR2Z1Q8NG97 314 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 OR5D13Q8NGL4 314 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 OR6T1Q8NGN1 323 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 OR10Z1Q8NGY1 313 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 OR1F12Q8NHA8 337 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 NFKBIDQ8NI38 313 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 ACOT11Q8WXI4 607 aaPredicted RBP3.14□□□□□ -1.91
USP54-217ENST00000498213 VPS33AQ96AX1 596 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 CMBLQ96DG6 245 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 PRRC1Q96M27 445 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 HARBI1Q96MB7 349 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 OR2V2Q96R30 315 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 NEURL2Q9BR09 285 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 CHID1Q9BWS9 393 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 WNT5BQ9H1J7 359 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms