RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 FAM231DQ6ZW35 169 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 ZFP62Q8NB50 900 aaPredicted RBP1.51□□□□□ -2.17
VPS50-219ENST00000495039 FBXO36Q8NEA4 188 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 OR5H2Q8NGV7 314 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 OR8K3Q8NH51 312 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 ZCCHC13Q8WW36 166 aaKnown RBP1.51□□□□□ -2.17
VPS50-219ENST00000495039 PKMYT1Q99640 499 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 ANP32EQ9BTT0 268 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 KIR3DX1Q9H7L2 352 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 RDH14Q9HBH5 336 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 FAM60AQ9NP50 221 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 LZTFL1Q9NQ48 299 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 DDX18Q9NVP1 670 aaKnown RBP1.51□□□□□ -2.17
VPS50-219ENST00000495039 RBM22Q9NW64 420 aaKnown RBP eCLIP1.51□□□□□ -2.17
VPS50-219ENST00000495039 IFNKQ9P0W0 207 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 PRO0628Q9UI54 55 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 ZNF407Q9C0G0 2248 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 LOC100653049A0A140TA62 436 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 IGLL5B9A064 214 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 D6RAR5 112 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 J3QRE1 110 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 RGS5O15539 181 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 TRAPPC6AO75865 159 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 KRT34O76011 436 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 PRPS1L1P21108 318 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 IVDP26440 423 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 TEAD1P28347 426 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 SLC6A1P30531 599 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 GNRHRP30968 328 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 TAS2R60P59551 318 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 PSMC5P62195 406 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 WDR43Q15061 677 aaKnown RBP eCLIP1.5□□□□□ -2.17
VPS50-219ENST00000495039 PMVKQ15126 192 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 ELOCQ15369 112 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 SLC9A3R2Q15599 337 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 ATP6V1FQ16864 119 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 CDNFQ49AH0 187 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 PDZD11Q5EBL8 140 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 FAM27D1Q5T7N8 215 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 KCTD16Q68DU8 428 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 CYP4Z2PQ8N1L4 340 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 ACTL9Q8TC94 416 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 TFGQ92734 400 aaPredicted RBP1.5□□□□□ -2.17
VPS50-219ENST00000495039 OTUB2Q96DC9 234 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 SMIM8Q96KF7 97 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 PPP1R36Q96LQ0 422 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 ZNF649Q9BS31 505 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 THTPAQ9BU02 230 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 TMED9Q9BVK6 235 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 DSN1Q9H410 356 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 NCOR1P1Q9H4R4 102 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 TMEM38BQ9NVV0 291 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 RABL2AQ9UBK7 228 aaPredicted RBP1.5□□□□□ -2.17
VPS50-219ENST00000495039 RAB23Q9ULC3 237 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 SLC7A11Q9UPY5 501 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 TRAPPC1Q9Y5R8 145 aa1.5□□□□□ -2.17
VPS50-219ENST00000495039 SPATA31E1Q6ZUB1 1445 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 VWA8A3KMH1 1905 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 FAM240AA0A1B0GVK7 77 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 ZNF878C9JN71 531 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 H3BQ85 93 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 PLEKHA8P1O95397 391 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 OR5AL1P0C617 328 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 TGFBR2P37173 567 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 GZMMP51124 257 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 MLF1P58340 268 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 TNFRSF9Q07011 255 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 ZNF141Q15928 474 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 KRTAP6-3Q3LI67 103 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 ZNF470Q6ECI4 717 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 WDR59Q6PJI9 974 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 EPGNQ6UW88 154 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 TMEM144Q7Z5S9 345 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 LINC00523Q86TU6 105 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 FAM184AQ8NB25 1140 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 OR4K2Q8NGD2 314 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 OR51A7Q8NH64 312 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 NDNFQ8TB73 568 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 KIAA1143Q96AT1 154 aaPredicted RBP1.49□□□□□ -2.17
VPS50-219ENST00000495039 IGF2BP2-AS1Q96M15 143 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 SPACA5Q96QH8 159 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 OR2M4Q96R27 311 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 METTL26Q96S19 204 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 CYP3A43Q9HB55 503 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 RPRD1BQ9NQG5 326 aaKnown RBP1.49□□□□□ -2.17
VPS50-219ENST00000495039 PARP11Q9NR21 331 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 TAC3Q9UHF0 121 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 TFR2Q9UP52 801 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 KLF13Q9Y2Y9 288 aaPredicted RBP1.49□□□□□ -2.17
VPS50-219ENST00000495039 MMACHCQ9Y4U1 282 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 KPTNQ9Y664 436 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 TMEM131Q92545 1883 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 PRR14LQ5THK1 2151 aa1.49□□□□□ -2.17
VPS50-219ENST00000495039 IGKV1OR2-108A0A075B7D4 117 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 GMNCA6NCL1 334 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 E7EQL1 145 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 RNF113AO15541 343 aaKnown RBP1.48□□□□□ -2.17
VPS50-219ENST00000495039 AQP9O43315 295 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 SYNGR2O43760 224 aa1.48□□□□□ -2.17
VPS50-219ENST00000495039 ENTPD6O75354 484 aa1.48□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms