RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 SPATA46Q5T0L3 261 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 OR2T2Q6IF00 324 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 UNQ6126/PRO20091Q6UXV3 157 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 BTN2A1Q7KYR7 527 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 RTN4RL2Q86UN3 420 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 CALHM1Q8IU99 346 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 SAXO1Q8IYX7 474 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 TMEM229BQ8NBD8 167 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 BHLHE23Q8NDY6 225 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 OR51T1Q8NGJ9 327 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 OR1J1Q8NGS3 322 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 LINC01560Q8TB33 94 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 SLC25A40Q8TBP6 338 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 OR5P3Q8WZ94 311 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 MRPS24Q96EL2 167 aaKnown RBP12.13□□□□□ -0.47
CUX1-209ENST00000487284 OR2J1Q9GZK6 312 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 TUBG2Q9NRH3 451 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 NUDT15Q9NV35 164 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 KCNK7Q9Y2U2 307 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 IGHV2OR16-5A0A0B4J2B6 119 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 OR5B21A6NL26 309 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 M0R1B8 84 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 SSX5O60225 188 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 HTR3BO95264 441 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 CSTBP04080 98 aaKnown RBP12.13□□□□□ -0.47
CUX1-209ENST00000487284 GTF2F2P13984 249 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 RCVRNP35243 200 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 RAG2P55895 527 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 TAS2R19P59542 299 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 ERVS71-1P61550 626 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 ARL6IP1Q15041 203 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 CARTPTQ16568 116 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 TATDN3Q17R31 274 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 ZNF611Q8N823 705 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 Q8NFD4 153 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 OR4C16Q8NGL9 310 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 ARHGAP5-AS1Q96IT6 56 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 ANAPC10Q9UM13 185 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 IQCF6A8MYZ5 107 aa12.12□□□□□ -0.47
CUX1-209ENST00000487284 AKR7A2O43488 359 aa12.12□□□□□ -0.47
CUX1-209ENST00000487284 CA11O75493 328 aa12.12□□□□□ -0.47
CUX1-209ENST00000487284 SELEP16581 610 aa12.12□□□□□ -0.47
CUX1-209ENST00000487284 HLA-DMAP28067 261 aa12.12□□□□□ -0.47
CUX1-209ENST00000487284 RAD52P43351 418 aa12.12□□□□□ -0.47
CUX1-209ENST00000487284 GPM6AP51674 278 aa12.12□□□□□ -0.47
CUX1-209ENST00000487284 SFRP4Q6FHJ7 346 aaPredicted RBP12.12□□□□□ -0.47
CUX1-209ENST00000487284 FAAP20Q6NZ36 180 aa12.12□□□□□ -0.47
CUX1-209ENST00000487284 STEAP1BQ6NZ63 245 aa12.12□□□□□ -0.47
CUX1-209ENST00000487284 TRAPPC6BQ86SZ2 158 aa12.12□□□□□ -0.47
CUX1-209ENST00000487284 TMEM200AQ86VY9 491 aa12.12□□□□□ -0.47
CUX1-209ENST00000487284 C1orf174Q8IYL3 243 aa12.12□□□□□ -0.47
CUX1-209ENST00000487284 OR51F2Q8NH61 342 aa12.12□□□□□ -0.47
CUX1-209ENST00000487284 NUDCD2Q8WVJ2 157 aa12.12□□□□□ -0.47
CUX1-209ENST00000487284 MARS2Q96GW9 593 aaKnown RBP12.12□□□□□ -0.47
CUX1-209ENST00000487284 POM121Q96HA1 1249 aa12.12□□□□□ -0.47
CUX1-209ENST00000487284 HIST1H2AAQ96QV6 131 aa12.12□□□□□ -0.47
CUX1-209ENST00000487284 PCDHB16Q9NRJ7 776 aa12.12□□□□□ -0.47
CUX1-209ENST00000487284 NDRG3Q9UGV2 375 aa12.12□□□□□ -0.47
CUX1-209ENST00000487284 ALG5Q9Y673 324 aa12.12□□□□□ -0.47
CUX1-209ENST00000487284 COL12A1Q99715 3063 aa12.12□□□□□ -0.47
CUX1-209ENST00000487284 SPTAN1Q13813 2472 aaKnown RBP12.11□□□□□ -0.47
CUX1-209ENST00000487284 HELZ2Q9BYK8 2649 aaKnown RBP12.11□□□□□ -0.47
CUX1-209ENST00000487284 UTP20O75691 2785 aaKnown RBP12.11□□□□□ -0.47
CUX1-209ENST00000487284 ZNF732B4DXR9 585 aa12.11□□□□□ -0.47
CUX1-209ENST00000487284 C19orf84I3L1E1 186 aa12.11□□□□□ -0.47
CUX1-209ENST00000487284 CYB5AP00167 134 aa12.11□□□□□ -0.47
CUX1-209ENST00000487284 CD74P04233 296 aa12.11□□□□□ -0.47
CUX1-209ENST00000487284 CD3DP04234 171 aa12.11□□□□□ -0.47
CUX1-209ENST00000487284 HNRNPCP07910 306 aaKnown RBP eCLIP12.11□□□□□ -0.47
CUX1-209ENST00000487284 SFTPBP07988 381 aa12.11□□□□□ -0.47
CUX1-209ENST00000487284 H2AFB2P0C5Z0 115 aa12.11□□□□□ -0.47
CUX1-209ENST00000487284 TRAPPC2P0DI81 140 aa12.11□□□□□ -0.47
CUX1-209ENST00000487284 TRAPPC2BP0DI82 140 aa12.11□□□□□ -0.47
CUX1-209ENST00000487284 BLVRBP30043 206 aaPredicted RBP12.11□□□□□ -0.47
CUX1-209ENST00000487284 CALCRP30988 508 aa12.11□□□□□ -0.47
CUX1-209ENST00000487284 GNG2P59768 71 aa12.11□□□□□ -0.47
CUX1-209ENST00000487284 GNG3P63215 75 aa12.11□□□□□ -0.47
CUX1-209ENST00000487284 NAAAQ02083 359 aa12.11□□□□□ -0.47
CUX1-209ENST00000487284 SLC25A26Q70HW3 274 aa12.11□□□□□ -0.47
CUX1-209ENST00000487284 SSX8Q7RTT4 187 aa12.11□□□□□ -0.47
CUX1-209ENST00000487284 OSR2Q8N2R0 312 aa12.11□□□□□ -0.47
CUX1-209ENST00000487284 KLF14Q8TD94 323 aaPredicted RBP12.11□□□□□ -0.47
CUX1-209ENST00000487284 ST8SIA4Q92187 359 aa12.11□□□□□ -0.47
CUX1-209ENST00000487284 DVL3Q92997 716 aaPredicted RBP12.11□□□□□ -0.47
CUX1-209ENST00000487284 PECRQ9BY49 303 aa12.11□□□□□ -0.47
CUX1-209ENST00000487284 BCL2L14Q9BZR8 327 aa12.11□□□□□ -0.47
CUX1-209ENST00000487284 MCUBQ9NWR8 336 aa12.11□□□□□ -0.47
CUX1-209ENST00000487284 NOP16Q9Y3C1 178 aaKnown RBP12.11□□□□□ -0.47
CUX1-209ENST00000487284 TRAV6A0A075B6T7 132 aa12.1□□□□□ -0.47
CUX1-209ENST00000487284 C7orf66A4D0T2 115 aa12.1□□□□□ -0.47
CUX1-209ENST00000487284 TUBAL3A6NHL2 446 aa12.1□□□□□ -0.47
CUX1-209ENST00000487284 SERPINE3A8MV23 424 aa12.1□□□□□ -0.47
CUX1-209ENST00000487284 ZNF736B4DX44 427 aaPredicted RBP12.1□□□□□ -0.47
CUX1-209ENST00000487284 J3QKU1 62 aa12.1□□□□□ -0.47
CUX1-209ENST00000487284 NDUFB6O95139 128 aa12.1□□□□□ -0.47
CUX1-209ENST00000487284 DHFRP00374 187 aa12.1□□□□□ -0.47
CUX1-209ENST00000487284 CA6P23280 308 aa12.1□□□□□ -0.47
CUX1-209ENST00000487284 MPV17P39210 176 aa12.1□□□□□ -0.47
CUX1-209ENST00000487284 CD300CQ08708 224 aa12.1□□□□□ -0.47
CUX1-209ENST00000487284 PSG7Q13046 419 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 195.1 ms