RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 S100PBPQ96BU1 408 aa11.65□□□□□ -0.55
USP40-214ENST00000483519 NAA60Q9H7X0 242 aa11.65□□□□□ -0.55
USP40-214ENST00000483519 ALKBH4Q9NXW9 302 aa11.65□□□□□ -0.55
USP40-214ENST00000483519 SH3BGRL2Q9UJC5 107 aa11.65□□□□□ -0.55
USP40-214ENST00000483519 ELOA3CA0A087WX78 387 aaPredicted RBP11.64□□□□□ -0.55
USP40-214ENST00000483519 BTBD17A6NE02 478 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 CXorf65A6NEN9 183 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 ANKUB1A6NFN9 424 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 DHRS7CA6NNS2 312 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 H3BQ15 152 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 H7C1Q1 480 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 PPP1R2P9O14990 202 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 ST8SIA3O43173 380 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 LY86O95711 162 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 DRD1P21728 446 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 DUSP1P28562 367 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 ZNF133P52736 654 aaPredicted RBP11.64□□□□□ -0.55
USP40-214ENST00000483519 UBE2KP61086 200 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 FAM57BQ71RH2 274 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 SSX9Q7RTT3 188 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 APCDD1LQ8NCL9 501 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 OR10D4PQ8NGN7 298 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 GTF3AQ92664 365 aaKnown RBP11.64□□□□□ -0.55
USP40-214ENST00000483519 SUCNR1Q9BXA5 334 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 CRLF2Q9HC73 371 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 SERINC1Q9NRX5 453 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 ZNF319Q9P2F9 582 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 ANXA10Q9UJ72 324 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 IGKV1D-8A0A087WSZ0 117 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 A0A1W2PNV4 684 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 RAMP1O60894 148 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 NKX6-1P78426 367 aaPredicted RBP11.64□□□□□ -0.55
USP40-214ENST00000483519 TMEM187Q14656 261 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 ELOBQ15370 118 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 FBXW12Q6X9E4 464 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 ZNF283Q8N7M2 679 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 SLC38A9Q8NBW4 561 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 NTNG2Q96CW9 530 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 RAB39BQ96DA2 213 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 C14orf144Q96I85 54 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 RARRES2Q99969 163 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 MRPL13Q9BYD1 178 aaKnown RBP11.64□□□□□ -0.55
USP40-214ENST00000483519 PRDM13Q9H4Q3 707 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 SIRT7Q9NRC8 400 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 PLEKHJ1Q9NW61 149 aa11.64□□□□□ -0.55
USP40-214ENST00000483519 MCTS1Q9ULC4 181 aaKnown RBP11.64□□□□□ -0.55
USP40-214ENST00000483519 OR5AC1P0C628 307 aa11.63□□□□□ -0.55
USP40-214ENST00000483519 OR5H8P0DN80 308 aa11.63□□□□□ -0.55
USP40-214ENST00000483519 ZNF266Q14584 549 aa11.63□□□□□ -0.55
USP40-214ENST00000483519 SLC16A14Q7RTX9 510 aa11.63□□□□□ -0.55
USP40-214ENST00000483519 C1QL2Q7Z5L3 287 aa11.63□□□□□ -0.55
USP40-214ENST00000483519 LRTM2Q8N967 370 aa11.63□□□□□ -0.55
USP40-214ENST00000483519 NOXO1Q8NFA2 376 aa11.63□□□□□ -0.55
USP40-214ENST00000483519 OR1N1Q8NGS0 311 aa11.63□□□□□ -0.55
USP40-214ENST00000483519 OR13D1Q8NGV5 346 aa11.63□□□□□ -0.55
USP40-214ENST00000483519 OR14K1Q8NGZ2 314 aa11.63□□□□□ -0.55
USP40-214ENST00000483519 Q8WTZ3 238 aa11.63□□□□□ -0.55
USP40-214ENST00000483519 NUDT22Q9BRQ3 303 aa11.63□□□□□ -0.55
USP40-214ENST00000483519 CA14Q9ULX7 337 aa11.63□□□□□ -0.55
USP40-214ENST00000483519 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.63□□□□□ -0.55
USP40-214ENST00000483519 IGHG1P01857 330 aa11.63□□□□□ -0.55
USP40-214ENST00000483519 HEXBP07686 556 aa11.63□□□□□ -0.55
USP40-214ENST00000483519 ZNF728P0DKX0 622 aa11.63□□□□□ -0.55
USP40-214ENST00000483519 ZNF43P17038 809 aa11.63□□□□□ -0.55
USP40-214ENST00000483519 GRB2P62993 217 aaKnown RBP11.63□□□□□ -0.55
USP40-214ENST00000483519 GNMTQ14749 295 aa11.63□□□□□ -0.55
USP40-214ENST00000483519 NSDHLQ15738 373 aa11.63□□□□□ -0.55
USP40-214ENST00000483519 NPRL2Q8WTW4 380 aa11.63□□□□□ -0.55
USP40-214ENST00000483519 RTN4IP1Q8WWV3 396 aaPredicted RBP11.63□□□□□ -0.55
USP40-214ENST00000483519 MARS2Q96GW9 593 aaKnown RBP11.63□□□□□ -0.55
USP40-214ENST00000483519 ELL3Q9HB65 397 aaPredicted RBP11.63□□□□□ -0.55
USP40-214ENST00000483519 NECAP2Q9NVZ3 263 aa11.63□□□□□ -0.55
USP40-214ENST00000483519 SPTY2D1-AS1A0A0U1RR47 76 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 MED19A0JLT2 244 aaPredicted RBP11.62□□□□□ -0.55
USP40-214ENST00000483519 FAM221AA4D161 298 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 LIPT2A6NK58 231 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 VSTM2BA6NLU5 285 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 RPL36A-HNRNPH2H7BZ11 118 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 BCAT2O15382 392 aaPredicted RBP11.62□□□□□ -0.55
USP40-214ENST00000483519 ST8SIA5O15466 376 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 HIST1H2BKO60814 126 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 IFNA10P01566 189 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 HIST1H2BJP06899 126 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 TMEM225BP0DP42 221 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 HIST1H2BOP23527 126 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 HIST1H2BBP33778 126 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 HIST1H2BDP58876 126 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 HIST1H2BCP62807 126 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 NHLH2Q02577 135 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 UBE2V2Q15819 145 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 HIST2H2BEQ16778 126 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 SP6Q3SY56 376 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.62□□□□□ -0.55
USP40-214ENST00000483519 CDPF1Q6NVV7 123 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 C6orf201Q7Z4U5 140 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 LYZL2Q7Z4W2 148 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 ZNF441Q8N8Z8 693 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 HIST1H2BHQ93079 126 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 TOMM40LQ969M1 308 aa11.62□□□□□ -0.55
USP40-214ENST00000483519 CPNE4Q96A23 557 aaPredicted RBP11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms