RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 C10orf91Q5T1B1 145 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 SYPL2Q5VXT5 272 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 C1orf94Q6P1W5 598 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 RPL22L1Q6P5R6 122 aaKnown RBP4.26□□□□□ -1.73
USP40-213ENST00000483216 ZCCHC12Q6PEW1 402 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 ADAMTSL5Q6ZMM2 481 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 VTCN1Q7Z7D3 282 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 ZNF546Q86UE3 836 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 PARGQ86W56 976 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 KCNRGQ8N5I3 272 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 ARIH2OSQ8N7S6 290 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 TMEM185AQ8NFB2 350 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 OR2T33Q8NG76 320 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 OR6C4Q8NGE1 309 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 OR5W2Q8NH69 310 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 OR1S1Q8NH92 325 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 PIGXQ8TBF5 258 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 TRMT10AQ8TBZ6 339 aaKnown RBP4.26□□□□□ -1.73
USP40-213ENST00000483216 ING5Q8WYH8 240 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 RAB7BQ96AH8 199 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 PPCDCQ96CD2 204 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 OTUB2Q96DC9 234 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 MALSU1Q96EH3 234 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 BTF3L4Q96K17 158 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 NOL4LQ96MY1 436 aaPredicted RBP4.26□□□□□ -1.73
USP40-213ENST00000483216 TSSK3Q96PN8 268 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 COPS8Q99627 209 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 NIPSNAP1Q9BPW8 284 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 ZNF426Q9BUY5 554 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 PBDC1Q9BVG4 233 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 TOLLIPQ9H0E2 274 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 MRPS30Q9NP92 439 aaKnown RBP4.26□□□□□ -1.73
USP40-213ENST00000483216 ESM1Q9NQ30 184 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 CTPS2Q9NRF8 586 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 CLEC4EQ9ULY5 219 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 PIN4Q9Y237 131 aaKnown RBP4.26□□□□□ -1.73
USP40-213ENST00000483216 KLHDC2Q9Y2U9 406 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 RNF115Q9Y4L5 304 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 FXYD6-FXYD2A0A087WZ82 144 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 SMIM28A0A1B0GU29 152 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 DAPL1A0PJW8 107 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 OR6C74A6NCV1 312 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 OR2AT4A6NND4 320 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 LOC730098B7Z3J9 87 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 F5H5T6 163 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 SMLR1H3BR10 107 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 MFNGO00587 321 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 ARPC5O15511 151 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 NDUFB6O95139 128 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 PDYNP01213 254 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 CATP04040 527 aaKnown RBP4.25□□□□□ -1.73
USP40-213ENST00000483216 UCHL1P09936 223 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 C1GALT1C1LP0DN25 315 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 ABOP16442 354 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 HTR2CP28335 458 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 RPL4P36578 427 aaKnown RBP4.25□□□□□ -1.73
USP40-213ENST00000483216 OR1G1P47890 313 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 RBP2P50120 134 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 CRYBB1P53674 252 aaPredicted RBP4.25□□□□□ -1.73
USP40-213ENST00000483216 VSX2P58304 361 aaPredicted RBP4.25□□□□□ -1.73
USP40-213ENST00000483216 TAS2R31P59538 309 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 TAS2R19P59542 299 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 PKIAP61925 76 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 HOXC5Q00444 222 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 FABP5Q01469 135 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 TNFRSF17Q02223 184 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 GINS1Q14691 196 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 SLC10A1Q14973 349 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 ZNF528Q3MIS6 628 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 RNASE10Q5GAN6 216 aaKnown RBP4.25□□□□□ -1.73
USP40-213ENST00000483216 GLT8D1Q68CQ7 371 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 RAB12Q6IQ22 244 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 MED27Q6P2C8 311 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 ZNF322Q6U7Q0 402 aaPredicted RBP4.25□□□□□ -1.73
USP40-213ENST00000483216 SCIMPQ6UWF3 145 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 SBSNQ6UWP8 590 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 WDR88Q6ZMY6 472 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 RPS27LQ71UM5 84 aaKnown RBP4.25□□□□□ -1.73
USP40-213ENST00000483216 TAC4Q86UU9 113 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 ANGPTL5Q86XS5 388 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 SYS1Q8N2H4 156 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 GPR137CQ8N3F9 429 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 HDDC3Q8N4P3 179 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 LFNGQ8NES3 379 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 OR13D1Q8NGV5 346 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 OR6N1Q8NGY5 312 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 OR52J3Q8NH60 311 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 LCN9Q8WX39 176 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 OR5P2Q8WZ92 322 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 TMEM203Q969S6 136 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 MRPS24Q96EL2 167 aaKnown RBP4.25□□□□□ -1.73
USP40-213ENST00000483216 ZNF414Q96IQ9 312 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 CYYR1Q96J86 154 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 PRRC1Q96M27 445 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 SLC35A5Q9BS91 424 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 WRAP53Q9BUR4 548 aaKnown RBP4.25□□□□□ -1.73
USP40-213ENST00000483216 TMED9Q9BVK6 235 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 FXYD6Q9H0Q3 95 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 ABCG8Q9H221 673 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 CXCL16Q9H2A7 254 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms