RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 Q96M66 194 aa6.97□□□□□ -1.29
USP4-210ENST00000483212 ZNF488Q96MN9 340 aa6.97□□□□□ -1.29
USP4-210ENST00000483212 DIRC2Q96SL1 478 aa6.97□□□□□ -1.29
USP4-210ENST00000483212 NRIP2Q9BQI9 281 aa6.97□□□□□ -1.29
USP4-210ENST00000483212 NICN1Q9BSH3 213 aa6.97□□□□□ -1.29
USP4-210ENST00000483212 SRRQ9GZT4 340 aa6.97□□□□□ -1.29
USP4-210ENST00000483212 BANF2Q9H503 90 aa6.97□□□□□ -1.29
USP4-210ENST00000483212 HES4Q9HCC6 221 aa6.97□□□□□ -1.29
USP4-210ENST00000483212 C14orf119Q9NWQ9 140 aa6.97□□□□□ -1.29
USP4-210ENST00000483212 NKIRAS2Q9NYR9 191 aa6.97□□□□□ -1.29
USP4-210ENST00000483212 ADAM30Q9UKF2 790 aa6.97□□□□□ -1.29
USP4-210ENST00000483212 RAB22AQ9UL26 194 aa6.97□□□□□ -1.29
USP4-210ENST00000483212 A0A0A6YYH2 397 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 A0A0G2JMP0 313 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 A0A0X1KG70 313 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 A6NJ64 397 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.96□□□□□ -1.3
USP4-210ENST00000483212 FAM25AB3EWG3 89 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 FAM25CB3EWG5 89 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 FAM25GB3EWG6 89 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.96□□□□□ -1.3
USP4-210ENST00000483212 ZNF780AO75290 641 aaPredicted RBP6.96□□□□□ -1.3
USP4-210ENST00000483212 TPPPO94811 219 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 HLA-DQB1P01920 261 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 SOD3P08294 240 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 SERPINA2P20848 420 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 CDK2P24941 298 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 PTBP1P26599 531 aaKnown RBP eCLIP6.96□□□□□ -1.3
USP4-210ENST00000483212 CFHR2P36980 270 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 RBMXP38159 391 aaKnown RBP6.96□□□□□ -1.3
USP4-210ENST00000483212 RANBP1P43487 201 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 PPOXP50336 477 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 TMEM50BP56557 158 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 TAS2R20P59543 309 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 FGF12P61328 243 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 TNFAIP6P98066 277 aaPredicted RBP6.96□□□□□ -1.3
USP4-210ENST00000483212 HOXA4Q00056 320 aaPredicted RBP6.96□□□□□ -1.3
USP4-210ENST00000483212 MZT1Q08AG7 82 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 GPR176Q14439 515 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 ZNF846Q147U1 533 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 FAM209AQ5JX71 171 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 SIGIRRQ6IA17 410 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 DNM1P46Q6ZS02 220 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 ZNF826PQ6ZT77 177 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 MKXQ8IYA7 352 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 IZUMO1Q8IYV9 350 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 FBXL14Q8N1E6 418 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 ZCCHC24Q8N2G6 241 aaKnown RBP6.96□□□□□ -1.3
USP4-210ENST00000483212 OSR2Q8N2R0 312 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 OR4M2Q8NGB6 313 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 OR51T1Q8NGJ9 327 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 Q8TCH9 128 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 FBXW5Q969U6 566 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 MRPS24Q96EL2 167 aaKnown RBP6.96□□□□□ -1.3
USP4-210ENST00000483212 CEP19Q96LK0 163 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 OR2V2Q96R30 315 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 ABHD1Q96SE0 405 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 NUDT16L1Q9BRJ7 211 aaKnown RBP6.96□□□□□ -1.3
USP4-210ENST00000483212 TRAF4Q9BUZ4 470 aaPredicted RBP6.96□□□□□ -1.3
USP4-210ENST00000483212 TMEM59Q9BXS4 323 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 WDR12Q9GZL7 423 aaKnown RBP6.96□□□□□ -1.3
USP4-210ENST00000483212 CST11Q9H112 138 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 RHOFQ9HBH0 211 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 HMG20AQ9NP66 347 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 RBFOX1Q9NWB1 397 aaKnown RBP6.96□□□□□ -1.3
USP4-210ENST00000483212 ZNF581Q9P0T4 197 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 IL36RNQ9UBH0 155 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 IL19Q9UHD0 177 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 POLDIP2Q9Y2S7 368 aa6.96□□□□□ -1.3
USP4-210ENST00000483212 UTP20O75691 2785 aaKnown RBP6.95□□□□□ -1.3
USP4-210ENST00000483212 A1L4Q6 167 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 FABP12A6NFH5 140 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 SRRM5B3KS81 715 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 J3QRK9 145 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 CTDSPLO15194 276 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 SOCS1O15524 211 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 AKR7A2O43488 359 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 XRCC3O43542 346 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 CRTAPO75718 401 aaPredicted RBP6.95□□□□□ -1.3
USP4-210ENST00000483212 HTR3BO95264 441 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 LHBP01229 141 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 CHRM2P08172 466 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 GTF2F2P13984 249 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 EGR1P18146 543 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 CD40LGP29965 261 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 NR4A2P43354 598 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 SRP9P49458 86 aaKnown RBP6.95□□□□□ -1.3
USP4-210ENST00000483212 PPP5CP53041 499 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 RBM11P57052 281 aaKnown RBP6.95□□□□□ -1.3
USP4-210ENST00000483212 SNRPD2P62316 118 aaKnown RBP6.95□□□□□ -1.3
USP4-210ENST00000483212 IFITM3Q01628 133 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 TLE4Q04727 773 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 MADCAM1Q13477 382 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 RSU1Q15404 277 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 TESK1Q15569 626 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 PIGYQ3MUY2 71 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 ZNF260Q3ZCT1 412 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 PLAC9Q5JTB6 97 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 SPANXN2Q5MJ10 180 aa6.95□□□□□ -1.3
USP4-210ENST00000483212 SP5Q6BEB4 398 aaPredicted RBP6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms