RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 L3MBTL1Q9Y468 752 aa3.34□□□□□ -1.87
VPS41-212ENST00000482217 BAZ2AQ9UIF9 1905 aaKnown RBP3.34□□□□□ -1.88
VPS41-212ENST00000482217 PHF3Q92576 2039 aaKnown RBP3.34□□□□□ -1.88
VPS41-212ENST00000482217 CHD2O14647 1828 aaKnown RBP3.33□□□□□ -1.88
VPS41-212ENST00000482217 SCN5AQ14524 2016 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 IGKV1D-8A0A087WSZ0 117 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 A0A1B0GUV1 79 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 PVALEFA0A1B0GWK0 134 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 C5orf58C9J3I9 102 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 PRAC2D3DTV9 90 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 LOC110117498-PIK3R3F6TDL0 507 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 TNFRSF11BO00300 401 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 CCDC22O60826 627 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 OR7C1O76099 320 aaPredicted RBP3.33□□□□□ -1.88
VPS41-212ENST00000482217 IFNA10P01566 189 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 OR5AL1P0C617 328 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 PGA5P0DJD9 388 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 OR13C7P0DN81 318 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 GABRA1P14867 456 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 GPX2P18283 190 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 HIST1H1TP22492 207 aaPredicted RBP3.33□□□□□ -1.88
VPS41-212ENST00000482217 SLC2A5P22732 501 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 IL12AP29459 219 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 TSPOP30536 169 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 RND2P52198 227 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 RAB38P57729 211 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 TAS2R43P59537 309 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 RPS27AP62979 156 aaKnown RBP3.33□□□□□ -1.88
VPS41-212ENST00000482217 PUDPQ08623 228 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 ZNF616Q08AN1 781 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 CDK10Q15131 360 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 SHHQ15465 462 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 MICAQ29983 383 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 TCTEX1D4Q5JR98 221 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 CLEC12AQ5QGZ9 265 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 TPTE2P1Q5T6R2 138 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 TMEM78Q5T7P6 136 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 ATP1A1-AS1Q5TC04 95 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 UBE2UQ5VVX9 321 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 KCTD16Q68DU8 428 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 ZNF57Q68EA5 555 aaPredicted RBP3.33□□□□□ -1.88
VPS41-212ENST00000482217 TMEM207Q6UWW9 146 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 P2RY8Q86VZ1 359 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 SKA3Q8IX90 412 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 ZNF557Q8N988 423 aaPredicted RBP3.33□□□□□ -1.88
VPS41-212ENST00000482217 SUMF1Q8NBK3 374 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 OR13C6PQ8NH95 151 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 ACOT12Q8WYK0 555 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 RDH5Q92781 318 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 LRRC58Q96CX6 371 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 TMEM80Q96HE8 168 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 C2orf48Q96LS8 159 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 FAM218AQ96MZ4 157 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 OR52B2Q96RD2 323 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 CMSS1Q9BQ75 279 aaKnown RBP3.33□□□□□ -1.88
VPS41-212ENST00000482217 EBF4Q9BQW3 602 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 MARVELD1Q9BSK0 173 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 FAIMQ9NVQ4 179 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 ANGPT4Q9Y264 503 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 PKIGQ9Y2B9 76 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 ASTN1O14525 1302 aa3.33□□□□□ -1.88
VPS41-212ENST00000482217 IGHV2OR16-5A0A0B4J2B6 119 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 H7C1H1 209 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 FGF17O60258 216 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 GALR3O60755 368 aaPredicted RBP3.32□□□□□ -1.88
VPS41-212ENST00000482217 RAMP1O60894 148 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 UGT2B11O75310 529 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 SLC2A10O95528 541 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 CLDN1O95832 211 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 RBMY1CP0DJD4 496 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 CD37P11049 281 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 SELEP16581 610 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 CXCL3P19876 107 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 RAB3AP20336 220 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 RAB5AP20339 215 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 PSMB1P20618 241 aaKnown RBP3.32□□□□□ -1.88
VPS41-212ENST00000482217 GLRXP35754 106 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 BIDP55957 195 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 TCTAP57738 103 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 RPL24P83731 157 aaKnown RBP3.32□□□□□ -1.88
VPS41-212ENST00000482217 NSDHLQ15738 373 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 N4BP2L1Q5TBK1 243 aaPredicted RBP3.32□□□□□ -1.88
VPS41-212ENST00000482217 HIST2H3PS2Q5TEC6 136 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 SPATA31B1PQ5VZV4 182 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 OTPQ5XKR4 325 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 RWDD4Q6NW29 188 aaKnown RBP3.32□□□□□ -1.88
VPS41-212ENST00000482217 PAMR1Q6UXH9 720 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 OSR2Q8N2R0 312 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 METTL27Q8N6F8 245 aaPredicted RBP3.32□□□□□ -1.88
VPS41-212ENST00000482217 ZNF383Q8NA42 475 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 PRSS33Q8NF86 280 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 OR4K15Q8NH41 348 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 OR2T6Q8NHC8 308 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 RPLP0P6Q8NHW5 317 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 AGAP11Q8TF27 550 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 APOBEC4Q8WW27 367 aaKnown RBP3.32□□□□□ -1.88
VPS41-212ENST00000482217 SRSF12Q8WXF0 261 aaKnown RBP3.32□□□□□ -1.88
VPS41-212ENST00000482217 RCN3Q96D15 328 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 C17orf77Q96MU5 243 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 RSPO3Q9BXY4 272 aaPredicted RBP3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms