RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 PECRQ9BY49 303 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 SLC5A7Q9GZV3 580 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 WNT5BQ9H1J7 359 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 HRH4Q9H3N8 390 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 UBE2J1Q9Y385 318 aaPredicted RBP11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 MCRIP1C9JLW8 97 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 TRAPPC2LH3BP13 241 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 H3BP45 60 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 PRH1P02810 166 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 ZNF17P17021 662 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 ATF4P18848 351 aaPredicted RBP11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 AIMP2Q13155 320 aaKnown RBP11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 RNFT1Q5M7Z0 435 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 GGNQ86UU5 652 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 TMEM185AQ8NFB2 350 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 SULT4A1Q9BR01 284 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 AK3Q9UIJ7 227 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 ARFGEF3Q5TH69 2177 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 C9orf170A2RU37 121 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 IGHMP01871 453 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 CHRM2P08172 466 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 IGFBP3P17936 291 aaPredicted RBP11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 CEBPDP49716 269 aaPredicted RBP11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 BTN1A1Q13410 526 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 RAB35Q15286 201 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 TMEM123Q8N131 208 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 SUN5Q8TC36 379 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 KCNE4Q8WWG9 221 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 SUCNR1Q9BXA5 334 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 TREM1Q9NP99 234 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 ALX3O95076 343 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 GIPP09681 153 aaPredicted RBP11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 PCBD1P61457 104 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 PRDX4Q13162 271 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 EDDM3AQ14507 147 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 FAM27BQ5VT28 67 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 MKXQ8IYA7 352 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 TMEM217Q8N7C4 229 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 DEFB108BQ8NET1 73 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 RFESDQ8TAC1 157 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 PIPOXQ9P0Z9 390 aa11.94□□□□□ -0.5
CCDC88A-211ENST00000471947 ANKRD30BLA7E2S9 258 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 SYNGR1O43759 233 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 CD63P08962 238 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 NME2P22392 152 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 MRPS34P82930 218 aaKnown RBP11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 SMCO1Q147U7 214 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 HS3ST6Q96QI5 342 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 GSX2Q9BZM3 304 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 MSL2Q9HCI7 577 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 PNRC2Q9NPJ4 139 aaKnown RBP11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 SESN1Q9Y6P5 492 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 ZNF705EA8MWA4 302 aaPredicted RBP11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 F8VVB4 439 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 F8VWA3 439 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 LILRA1O75019 489 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 EIF3GO75821 320 aaKnown RBP eCLIP11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 BCL3P20749 454 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 PIGPP57054 158 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 CLINT1Q14677 625 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 IGSF11Q5DX21 431 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 SGPP2Q8IWX5 399 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 CDH26Q8IXH8 852 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 IQCF2Q8IXL9 164 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 FAM109AQ8N4B1 249 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 CRIM1Q9NZV1 1036 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 KLF13Q9Y2Y9 288 aaPredicted RBP11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 SPEF1Q9Y4P9 236 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 WRBO00258 174 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 IFNA21P01568 189 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 GABRA1P14867 456 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 LSM6P62312 80 aaKnown RBP11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 IZUMO4Q1ZYL8 232 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 FDX2Q6P4F2 183 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 DRAM2Q6UX65 266 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 ZNF826PQ6ZT77 177 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 LYG2Q86SG7 212 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 ZBTB44Q8NCP5 570 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 MOB1AQ9H8S9 216 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 ITGB1BP2Q9UKP3 347 aa11.93□□□□□ -0.5
CCDC88A-211ENST00000471947 RSPO1Q2MKA7 263 aaPredicted RBP11.92□□□□□ -0.5
CCDC88A-211ENST00000471947 TOR2AQ5JU69 321 aa11.92□□□□□ -0.5
CCDC88A-211ENST00000471947 CLEC18BQ6UXF7 455 aa11.92□□□□□ -0.5
CCDC88A-211ENST00000471947 OSR2Q8N2R0 312 aa11.92□□□□□ -0.5
CCDC88A-211ENST00000471947 OR14I1A6ND48 311 aa11.92□□□□□ -0.5
CCDC88A-211ENST00000471947 ZNF716A6NP11 495 aa11.92□□□□□ -0.5
CCDC88A-211ENST00000471947 ISG15P05161 165 aa11.92□□□□□ -0.5
CCDC88A-211ENST00000471947 TAGLNQ01995 201 aaKnown RBP11.92□□□□□ -0.5
CCDC88A-211ENST00000471947 ZNF616Q08AN1 781 aa11.92□□□□□ -0.5
CCDC88A-211ENST00000471947 FOXC1Q12948 553 aa11.92□□□□□ -0.5
CCDC88A-211ENST00000471947 RAB32Q13637 225 aa11.92□□□□□ -0.5
CCDC88A-211ENST00000471947 C1orf100Q5SVJ3 147 aa11.92□□□□□ -0.5
CCDC88A-211ENST00000471947 CLVS2Q5SYC1 327 aa11.92□□□□□ -0.5
CCDC88A-211ENST00000471947 CCDC28AQ8IWP9 274 aa11.92□□□□□ -0.5
CCDC88A-211ENST00000471947 HSD17B11Q8NBQ5 300 aa11.92□□□□□ -0.5
CCDC88A-211ENST00000471947 EMG1Q92979 244 aaKnown RBP11.92□□□□□ -0.5
CCDC88A-211ENST00000471947 NABP1Q96AH0 204 aa11.92□□□□□ -0.5
CCDC88A-211ENST00000471947 CHST5Q9GZS9 411 aa11.92□□□□□ -0.5
CCDC88A-211ENST00000471947 ZNF703Q9H7S9 590 aaPredicted RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms