RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 AK6Q9Y3D8 172 aaKnown RBP4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 SPIN1Q9Y657 262 aaPredicted RBP4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 PATJQ8NI35 1801 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 PTPRJQ12913 1337 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 FNDC1Q4ZHG4 1894 aaPredicted RBP4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 A0A0A0MQY5 61 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 C5orf67F2Z3F1 127 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 DEGS1O15121 323 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 SLC16A7O60669 478 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 NFATC1O95644 943 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 HAND1O96004 215 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 GCGP01275 180 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 CTSLP07711 333 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 FGF9P31371 208 aaPredicted RBP4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 SUMO2P61956 95 aaKnown RBP4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 SELENOWP63302 87 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 RUNX1Q01196 453 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 ACKR1Q16570 336 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 ALKAL2Q6UX46 152 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 Q6ZRM9 215 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 TSEN54Q7Z6J9 526 aaKnown RBP4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 HAPLN4Q86UW8 402 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 PARGQ86W56 976 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 HIST3H2BBQ8N257 126 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 BPIFB2Q8N4F0 458 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 BMPERQ8N8U9 685 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 CHST4Q8NCG5 386 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 OR9I1Q8NGQ6 314 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 FCAMRQ8WWV6 532 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 DYRK2Q92630 601 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 C8orf44Q96CB5 159 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 RSPRY1Q96DX4 576 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 GPR82Q96P67 336 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 RNF157Q96PX1 679 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 FGFBP2Q9BYJ0 223 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 VN1R1Q9GZP7 353 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 CWH43Q9H720 699 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 NOX4Q9NPH5 578 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 SPANXA1Q9NS26 97 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 OR1A1Q9P1Q5 309 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 GALPQ9UBC7 116 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 DHDHQ9UQ10 334 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 CHST2Q9Y4C5 530 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 RALGAPA1Q6GYQ0 2036 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 EPG5Q9HCE0 2579 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 DMXL1Q9Y485 3027 aa4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 TPRP12270 2363 aaKnown RBP4.16□□□□□ -1.74
CCDC88A-209ENST00000456975 TRGV11A0A075B6L2 103 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 TMEM129A0AVI4 362 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 USP17L23D6RBM5 183 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 KIR2DS3K7RE56 304 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 RNASET2O00584 256 aaKnown RBP4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 FAM189A1O60320 539 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 SLC25A12O75746 678 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 RFPL3SP0C7P2 107 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 ACP2P11117 423 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 RAB5AP20339 215 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 ITGB7P26010 798 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 POLR2IP36954 125 aaKnown RBP4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 KIR2DS4P43632 304 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 XCR1P46094 333 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 GABRA2P47869 451 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 FUT6P51993 359 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 RAB38P57729 211 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 RPL8P62917 257 aaKnown RBP4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 PITX1P78337 314 aaPredicted RBP4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 HHEXQ03014 270 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 KIR2DS3Q14952 304 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 PRSS8Q16651 343 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 LRRC75BQ2VPJ9 315 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 DCAF4L1Q3SXM0 396 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 ACTL10Q5JWF8 245 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 FFAR4Q5NUL3 377 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 TMEM78Q5T7P6 136 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 TMEM236Q5W0B7 351 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 RTL6Q6ICC9 239 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 ALKAL1Q6UXT8 129 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 GSG1LQ6UXU4 331 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 ZNF705AQ6ZN79 300 aaPredicted RBP4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 Q6ZSR9 355 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 MUC20Q8N307 709 aaPredicted RBP4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 MDS2Q8NDY4 140 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 OR10G4Q8NGN3 311 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 OR10Q1Q8NGQ4 319 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 OR5P2Q8WZ92 322 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 COPS8Q99627 209 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 GTSF1LQ9H1H1 148 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 BEX1Q9HBH7 125 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 HINT3Q9NQE9 182 aaKnown RBP4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 DLL3Q9NYJ7 618 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 DOK5Q9P104 306 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 MMP17Q9ULZ9 603 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 WSB1Q9Y6I7 421 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 NCOR2Q9Y618 2525 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 C2orf16Q68DN1 1984 aa4.15□□□□□ -1.74
CCDC88A-209ENST00000456975 PRSS51A0A1B0GVH4 220 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 MAP1LC3B2A6NCE7 125 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 FAM90A10PA6NDY2 464 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 ENSAO43768 121 aaKnown RBP4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 TMPRSS11DO60235 418 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms