RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 SNRPAP09012 282 aaKnown RBP1.71□□□□□ -2.14
USP40-209ENST00000452724 TEAD1P28347 426 aa1.71□□□□□ -2.14
USP40-209ENST00000452724 SLC6A1P30531 599 aa1.71□□□□□ -2.14
USP40-209ENST00000452724 TGFBR2P37173 567 aa1.71□□□□□ -2.14
USP40-209ENST00000452724 CCT6AP40227 531 aaKnown RBP1.71□□□□□ -2.14
USP40-209ENST00000452724 BCAP31P51572 246 aa1.71□□□□□ -2.14
USP40-209ENST00000452724 MLF1P58340 268 aa1.71□□□□□ -2.14
USP40-209ENST00000452724 RPL10AP62906 217 aaKnown RBP1.71□□□□□ -2.14
USP40-209ENST00000452724 TNFRSF9Q07011 255 aa1.71□□□□□ -2.14
USP40-209ENST00000452724 PDZD11Q5EBL8 140 aa1.71□□□□□ -2.14
USP40-209ENST00000452724 KCTD16Q68DU8 428 aa1.71□□□□□ -2.14
USP40-209ENST00000452724 FAM231DQ6ZW35 169 aa1.71□□□□□ -2.14
USP40-209ENST00000452724 TMEM144Q7Z5S9 345 aa1.71□□□□□ -2.14
USP40-209ENST00000452724 OR5H2Q8NGV7 314 aa1.71□□□□□ -2.14
USP40-209ENST00000452724 TFGQ92734 400 aaPredicted RBP1.71□□□□□ -2.14
USP40-209ENST00000452724 PPP1R36Q96LQ0 422 aa1.71□□□□□ -2.14
USP40-209ENST00000452724 TSNAXQ99598 290 aaKnown RBP1.71□□□□□ -2.14
USP40-209ENST00000452724 TMED9Q9BVK6 235 aa1.71□□□□□ -2.14
USP40-209ENST00000452724 DSN1Q9H410 356 aa1.71□□□□□ -2.14
USP40-209ENST00000452724 DDX18Q9NVP1 670 aaKnown RBP1.71□□□□□ -2.14
USP40-209ENST00000452724 PRO0628Q9UI54 55 aa1.71□□□□□ -2.14
USP40-209ENST00000452724 MCTS1Q9ULC4 181 aaKnown RBP1.71□□□□□ -2.14
USP40-209ENST00000452724 CFL2Q9Y281 166 aa1.71□□□□□ -2.14
USP40-209ENST00000452724 MMACHCQ9Y4U1 282 aa1.71□□□□□ -2.14
USP40-209ENST00000452724 MROH5Q6ZUA9 1318 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 IGLL5B9A064 214 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 H3BQ85 93 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 ENTPD6O75354 484 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 TRAPPC6AO75865 159 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 CPSF4O95639 269 aaKnown RBP1.7□□□□□ -2.14
USP40-209ENST00000452724 IVDP26440 423 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 PEX19P40855 299 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 DOC2AQ14183 400 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 ELOCQ15369 112 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 EPGNQ6UW88 154 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 CLEC19AQ6UXS0 136 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 PRNTQ86SH4 94 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 LINC00337Q8N6G1 96 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 LY6G5BQ8NDX9 201 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 FBXO36Q8NEA4 188 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 OR4K2Q8NGD2 314 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 IGF2BP2-AS1Q96M15 143 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 SPACA5Q96QH8 159 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 C20orf144Q9BQM9 153 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 THTPAQ9BU02 230 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 KIR3DX1Q9H7L2 352 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 CYP3A43Q9HB55 503 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 TFR2Q9UP52 801 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 KLF13Q9Y2Y9 288 aaPredicted RBP1.7□□□□□ -2.14
USP40-209ENST00000452724 PLXNB1O43157 2135 aa1.7□□□□□ -2.14
USP40-209ENST00000452724 NACADO15069 1562 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 NEURL4Q96JN8 1562 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 IGKV1OR2-108A0A075B7D4 117 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 LOC100653049A0A140TA62 436 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 GOLGA6L7A0A1B0GV03 622 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 FAM240AA0A1B0GVK7 77 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 H7C2Y5 167 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 J3QRE1 110 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 UPK1AO00322 258 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 KRT34O76011 436 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 OR2A4O95047 310 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 PLEKHA8P1O95397 391 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 OR5AL1P0C617 328 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 SRMP19623 302 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 MSR1P21757 451 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 CD9P21926 228 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 GZMMP51124 257 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 TAS2R60P59551 318 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 KRTAP25-1Q3LHN0 102 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 FAM27D1Q5T7N8 215 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 LINC00523Q86TU6 105 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 ZNF555Q8NEP9 628 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 OR51A7Q8NH64 312 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 NT5CQ8TCD5 201 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 TNFRSF14Q92956 283 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 FXYD5Q96DB9 178 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 SMIM8Q96KF7 97 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 OR2A7Q96R45 310 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 NCOR1P1Q9H4R4 102 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 RBM22Q9NW64 420 aaKnown RBP eCLIP1.69□□□□□ -2.14
USP40-209ENST00000452724 RAB23Q9ULC3 237 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 SLC7A11Q9UPY5 501 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 KPTNQ9Y664 436 aa1.69□□□□□ -2.14
USP40-209ENST00000452724 BAZ1BQ9UIG0 1483 aaKnown RBP1.69□□□□□ -2.14
USP40-209ENST00000452724 GMNCA6NCL1 334 aa1.68□□□□□ -2.14
USP40-209ENST00000452724 E7EQL1 145 aa1.68□□□□□ -2.14
USP40-209ENST00000452724 RGS5O15539 181 aa1.68□□□□□ -2.14
USP40-209ENST00000452724 RNF113AO15541 343 aaKnown RBP1.68□□□□□ -2.14
USP40-209ENST00000452724 AQP9O43315 295 aa1.68□□□□□ -2.14
USP40-209ENST00000452724 DHRS3O75911 302 aa1.68□□□□□ -2.14
USP40-209ENST00000452724 ETHE1O95571 254 aa1.68□□□□□ -2.14
USP40-209ENST00000452724 PRPS1L1P21108 318 aa1.68□□□□□ -2.14
USP40-209ENST00000452724 FOXA1P55317 472 aa1.68□□□□□ -2.14
USP40-209ENST00000452724 PSMC5P62195 406 aa1.68□□□□□ -2.14
USP40-209ENST00000452724 RPL31P62899 125 aaKnown RBP1.68□□□□□ -2.14
USP40-209ENST00000452724 ENDOGQ14249 297 aaKnown RBP1.68□□□□□ -2.14
USP40-209ENST00000452724 ATP6V1FQ16864 119 aa1.68□□□□□ -2.14
USP40-209ENST00000452724 NDNFQ8TB73 568 aa1.68□□□□□ -2.14
USP40-209ENST00000452724 METTL26Q96S19 204 aa1.68□□□□□ -2.14
USP40-209ENST00000452724 COA1Q9GZY4 146 aa1.68□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms