RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 C6orf15Q6UXA7 325 aaPredicted RBP13.9□□□□□ -0.18
SHQ1-202ENST00000444040 SKA3Q8IX90 412 aa13.9□□□□□ -0.18
SHQ1-202ENST00000444040 BOLLQ8N9W6 283 aaKnown RBP13.9□□□□□ -0.18
SHQ1-202ENST00000444040 ZNF845Q96IR2 970 aaPredicted RBP13.9□□□□□ -0.18
SHQ1-202ENST00000444040 ACKR4Q9NPB9 350 aa13.9□□□□□ -0.18
SHQ1-202ENST00000444040 C1orf123Q9NWV4 160 aa13.9□□□□□ -0.18
SHQ1-202ENST00000444040 DNAJB11Q9UBS4 358 aa13.9□□□□□ -0.18
SHQ1-202ENST00000444040 CYTIPO60759 359 aa13.89□□□□□ -0.19
SHQ1-202ENST00000444040 CYB561P49447 251 aa13.89□□□□□ -0.19
SHQ1-202ENST00000444040 ZNF92Q03936 586 aa13.89□□□□□ -0.19
SHQ1-202ENST00000444040 ABHD3Q8WU67 409 aa13.89□□□□□ -0.19
SHQ1-202ENST00000444040 SULT4A1Q9BR01 284 aa13.89□□□□□ -0.19
SHQ1-202ENST00000444040 SLC5A7Q9GZV3 580 aa13.89□□□□□ -0.19
SHQ1-202ENST00000444040 ASF1BQ9NVP2 202 aa13.89□□□□□ -0.19
SHQ1-202ENST00000444040 FAM157CP0CG43 387 aa13.89□□□□□ -0.19
SHQ1-202ENST00000444040 OR5H8P0DN80 308 aa13.89□□□□□ -0.19
SHQ1-202ENST00000444040 ATF4P18848 351 aaPredicted RBP13.89□□□□□ -0.19
SHQ1-202ENST00000444040 DTYMKP23919 212 aa13.89□□□□□ -0.19
SHQ1-202ENST00000444040 AIMP2Q13155 320 aaKnown RBP13.89□□□□□ -0.19
SHQ1-202ENST00000444040 CCDC36Q8IYA8 594 aa13.89□□□□□ -0.19
SHQ1-202ENST00000444040 TMED6Q8WW62 240 aa13.89□□□□□ -0.19
SHQ1-202ENST00000444040 RGCCQ9H4X1 137 aa13.89□□□□□ -0.19
SHQ1-202ENST00000444040 P4HTMQ9NXG6 502 aa13.89□□□□□ -0.19
SHQ1-202ENST00000444040 GSKIPQ9P0R6 139 aa13.89□□□□□ -0.19
SHQ1-202ENST00000444040 CRYM-AS1A6NIL9 109 aa13.88□□□□□ -0.19
SHQ1-202ENST00000444040 FCGR3AP08637 254 aa13.88□□□□□ -0.19
SHQ1-202ENST00000444040 MMP7P09237 267 aaPredicted RBP13.88□□□□□ -0.19
SHQ1-202ENST00000444040 PET100P0DJ07 73 aa13.88□□□□□ -0.19
SHQ1-202ENST00000444040 GDF1P27539 372 aa13.88□□□□□ -0.19
SHQ1-202ENST00000444040 DHRS11Q6UWP2 260 aa13.88□□□□□ -0.19
SHQ1-202ENST00000444040 RNF141Q8WVD5 230 aa13.88□□□□□ -0.19
SHQ1-202ENST00000444040 CPNE4Q96A23 557 aaPredicted RBP13.88□□□□□ -0.19
SHQ1-202ENST00000444040 LRRC46Q96FV0 321 aa13.88□□□□□ -0.19
SHQ1-202ENST00000444040 CMSS1Q9BQ75 279 aaKnown RBP13.88□□□□□ -0.19
SHQ1-202ENST00000444040 GEMIN2O14893 280 aaKnown RBP13.88□□□□□ -0.19
SHQ1-202ENST00000444040 NUPL2O15504 423 aaKnown RBP13.88□□□□□ -0.19
SHQ1-202ENST00000444040 F10P00742 488 aa13.88□□□□□ -0.19
SHQ1-202ENST00000444040 OPRM1P35372 400 aa13.88□□□□□ -0.19
SHQ1-202ENST00000444040 RBMXP38159 391 aaKnown RBP13.88□□□□□ -0.19
SHQ1-202ENST00000444040 PCBD1P61457 104 aa13.88□□□□□ -0.19
SHQ1-202ENST00000444040 ZXDAP98168 799 aa13.88□□□□□ -0.19
SHQ1-202ENST00000444040 OR8B8Q15620 311 aa13.88□□□□□ -0.19
SHQ1-202ENST00000444040 ZNF585AQ6P3V2 769 aa13.88□□□□□ -0.19
SHQ1-202ENST00000444040 SGPP2Q8IWX5 399 aa13.88□□□□□ -0.19
SHQ1-202ENST00000444040 OR10AD1Q8NGE0 317 aa13.88□□□□□ -0.19
SHQ1-202ENST00000444040 SFTPBP07988 381 aa13.87□□□□□ -0.19
SHQ1-202ENST00000444040 PIGYQ3MUY2 71 aa13.87□□□□□ -0.19
SHQ1-202ENST00000444040 DBX2Q6ZNG2 339 aa13.87□□□□□ -0.19
SHQ1-202ENST00000444040 TMEM105Q8N8V8 129 aa13.87□□□□□ -0.19
SHQ1-202ENST00000444040 SPRY4Q9C004 299 aa13.87□□□□□ -0.19
SHQ1-202ENST00000444040 SLC6A15Q9H2J7 730 aa13.87□□□□□ -0.19
SHQ1-202ENST00000444040 IL36GQ9NZH8 169 aa13.87□□□□□ -0.19
SHQ1-202ENST00000444040 CNTRLQ7Z7A1 2325 aa13.87□□□□□ -0.19
SHQ1-202ENST00000444040 DNASE2O00115 360 aaPredicted RBP13.87□□□□□ -0.19
SHQ1-202ENST00000444040 EDN3P14138 238 aa13.87□□□□□ -0.19
SHQ1-202ENST00000444040 ZNF708P17019 499 aa13.87□□□□□ -0.19
SHQ1-202ENST00000444040 FUT6P51993 359 aa13.87□□□□□ -0.19
SHQ1-202ENST00000444040 ARHGDIBP52566 201 aa13.87□□□□□ -0.19
SHQ1-202ENST00000444040 SPEM2Q0P670 501 aa13.87□□□□□ -0.19
SHQ1-202ENST00000444040 PDZK1IP1Q13113 114 aa13.87□□□□□ -0.19
SHQ1-202ENST00000444040 LPAL2Q16609 132 aa13.87□□□□□ -0.19
SHQ1-202ENST00000444040 SPINK14Q6IE38 97 aa13.87□□□□□ -0.19
SHQ1-202ENST00000444040 TMEM200AQ86VY9 491 aa13.87□□□□□ -0.19
SHQ1-202ENST00000444040 OSR2Q8N2R0 312 aa13.87□□□□□ -0.19
SHQ1-202ENST00000444040 DYRK2Q92630 601 aa13.87□□□□□ -0.19
SHQ1-202ENST00000444040 TMEM45BQ96B21 275 aa13.87□□□□□ -0.19
SHQ1-202ENST00000444040 NECAP2Q9NVZ3 263 aa13.87□□□□□ -0.19
SHQ1-202ENST00000444040 MEMO1Q9Y316 297 aa13.87□□□□□ -0.19
SHQ1-202ENST00000444040 ZNF587BE7ETH6 402 aa13.86□□□□□ -0.19
SHQ1-202ENST00000444040 S100A10P60903 97 aa13.86□□□□□ -0.19
SHQ1-202ENST00000444040 DEFA5Q01523 94 aa13.86□□□□□ -0.19
SHQ1-202ENST00000444040 IAH1Q2TAA2 248 aaPredicted RBP13.86□□□□□ -0.19
SHQ1-202ENST00000444040 TCEAL6Q6IPX3 200 aa13.86□□□□□ -0.19
SHQ1-202ENST00000444040 FBXL14Q8N1E6 418 aa13.86□□□□□ -0.19
SHQ1-202ENST00000444040 TCEAL3Q969E4 200 aa13.86□□□□□ -0.19
SHQ1-202ENST00000444040 MARS2Q96GW9 593 aaKnown RBP13.86□□□□□ -0.19
SHQ1-202ENST00000444040 CNTNAP3BQ96NU0 1288 aa13.86□□□□□ -0.19
SHQ1-202ENST00000444040 CNTNAP3Q9BZ76 1288 aa13.86□□□□□ -0.19
SHQ1-202ENST00000444040 TMEM218A2RU14 115 aa13.86□□□□□ -0.19
SHQ1-202ENST00000444040 CDK2AP1O14519 115 aa13.86□□□□□ -0.19
SHQ1-202ENST00000444040 ACTL6AO96019 429 aa13.86□□□□□ -0.19
SHQ1-202ENST00000444040 HKR1P10072 659 aa13.86□□□□□ -0.19
SHQ1-202ENST00000444040 TSPO2Q5TGU0 170 aa13.86□□□□□ -0.19
SHQ1-202ENST00000444040 BRICD5Q6PL45 260 aa13.86□□□□□ -0.19
SHQ1-202ENST00000444040 CPEB3Q8NE35 698 aaKnown RBP13.86□□□□□ -0.19
SHQ1-202ENST00000444040 SPSB4Q96A44 273 aa13.86□□□□□ -0.19
SHQ1-202ENST00000444040 NARS2Q96I59 477 aaKnown RBP13.86□□□□□ -0.19
SHQ1-202ENST00000444040 C1QTNF5Q9BXJ0 243 aa13.86□□□□□ -0.19
SHQ1-202ENST00000444040 BCO1Q9HAY6 547 aa13.86□□□□□ -0.19
SHQ1-202ENST00000444040 TUBD1Q9UJT1 453 aa13.86□□□□□ -0.19
SHQ1-202ENST00000444040 MUC3AQ02505 3323 aa13.86□□□□□ -0.19
SHQ1-202ENST00000444040 MST1LQ2TV78 715 aa13.86□□□□□ -0.19
SHQ1-202ENST00000444040 LRFN1Q9P244 771 aa13.86□□□□□ -0.19
SHQ1-202ENST00000444040 ST3GAL6Q9Y274 331 aa13.86□□□□□ -0.19
SHQ1-202ENST00000444040 FREM2Q5SZK8 3169 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 ZNF850A8MQ14 1090 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 ZNF205O95201 554 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 DAZAP2Q15038 168 aaPredicted RBP13.85□□□□□ -0.19
SHQ1-202ENST00000444040 NRN1LQ496H8 165 aa13.85□□□□□ -0.19
SHQ1-202ENST00000444040 PABPC1L2AQ5JQF8 200 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms