RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 NPBWR2P48146 333 aa12.03□□□□□ -0.48
SF3B1-204ENST00000414963 ART1P52961 327 aa12.03□□□□□ -0.48
SF3B1-204ENST00000414963 MRPS11P82912 194 aaKnown RBP12.03□□□□□ -0.48
SF3B1-204ENST00000414963 NHLRC3Q5JS37 347 aa12.03□□□□□ -0.48
SF3B1-204ENST00000414963 UBE2NLQ5JXB2 153 aa12.03□□□□□ -0.48
SF3B1-204ENST00000414963 ZNF826PQ6ZT77 177 aa12.03□□□□□ -0.48
SF3B1-204ENST00000414963 MOGAT3Q86VF5 341 aa12.03□□□□□ -0.48
SF3B1-204ENST00000414963 LRRC28Q86X40 367 aaPredicted RBP12.03□□□□□ -0.48
SF3B1-204ENST00000414963 TMEM104Q8NE00 496 aa12.03□□□□□ -0.48
SF3B1-204ENST00000414963 NEU4Q8WWR8 484 aaPredicted RBP12.03□□□□□ -0.48
SF3B1-204ENST00000414963 RAB40AQ8WXH6 277 aa12.03□□□□□ -0.48
SF3B1-204ENST00000414963 SLAMF9Q96A28 289 aa12.03□□□□□ -0.48
SF3B1-204ENST00000414963 SLC25A38Q96DW6 304 aa12.03□□□□□ -0.48
SF3B1-204ENST00000414963 SAP30LQ9HAJ7 183 aa12.03□□□□□ -0.48
SF3B1-204ENST00000414963 HES4Q9HCC6 221 aa12.03□□□□□ -0.48
SF3B1-204ENST00000414963 UFSP2Q9NUQ7 469 aa12.03□□□□□ -0.48
SF3B1-204ENST00000414963 C1orf123Q9NWV4 160 aa12.03□□□□□ -0.48
SF3B1-204ENST00000414963 RASL12Q9NYN1 266 aa12.03□□□□□ -0.48
SF3B1-204ENST00000414963 DCHS2Q6V1P9 2916 aa12.03□□□□□ -0.48
SF3B1-204ENST00000414963 IGHV3-64DA0A0J9YX35 117 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 A6NLC8 198 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 F8VVB4 439 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 F8VWA3 439 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 AKR7A2O43488 359 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 HTR3BO95264 441 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 ELK1P19419 428 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 BCL3P20749 454 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 TNFSF8P32971 234 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 S100A5P33763 92 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 EFNB2P52799 333 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 FGF12P61328 243 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 RPS27AP62979 156 aaKnown RBP12.02□□□□□ -0.49
SF3B1-204ENST00000414963 PLA2G7Q13093 441 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 LSAMPQ13449 338 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 OR10K2Q6IF99 312 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 CMTM4Q8IZR5 234 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 OSR2Q8N2R0 312 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 FAM89BQ8N5H3 189 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 OR51T1Q8NGJ9 327 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 OR11L1Q8NGX0 322 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 OR10K1Q8NGX5 313 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 HPS1Q92902 700 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 VRK1Q99986 396 aaPredicted RBP12.02□□□□□ -0.49
SF3B1-204ENST00000414963 TM2D1Q9BX74 207 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 CACNG6Q9BXT2 260 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 KCNK15Q9H427 330 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 ELL3Q9HB65 397 aaPredicted RBP12.02□□□□□ -0.49
SF3B1-204ENST00000414963 HMG20AQ9NP66 347 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 RHBDL2Q9NX52 303 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 ADAM30Q9UKF2 790 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 PPP1R3CQ9UQK1 317 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 FASNP49327 2511 aaKnown RBP12.02□□□□□ -0.49
SF3B1-204ENST00000414963 ARFGEF3Q5TH69 2177 aa12.02□□□□□ -0.49
SF3B1-204ENST00000414963 A0A0A6YYH2 397 aa12.01□□□□□ -0.49
SF3B1-204ENST00000414963 A0A1W2PP11 408 aa12.01□□□□□ -0.49
SF3B1-204ENST00000414963 A6NJ64 397 aa12.01□□□□□ -0.49
SF3B1-204ENST00000414963 SRRM5B3KS81 715 aa12.01□□□□□ -0.49
SF3B1-204ENST00000414963 RGS5O15539 181 aa12.01□□□□□ -0.49
SF3B1-204ENST00000414963 TPD52L2O43399 206 aaKnown RBP12.01□□□□□ -0.49
SF3B1-204ENST00000414963 CRTAPO75718 401 aaPredicted RBP12.01□□□□□ -0.49
SF3B1-204ENST00000414963 TPPPO94811 219 aa12.01□□□□□ -0.49
SF3B1-204ENST00000414963 HPXP02790 462 aa12.01□□□□□ -0.49
SF3B1-204ENST00000414963 CSTBP04080 98 aaKnown RBP12.01□□□□□ -0.49
SF3B1-204ENST00000414963 EIF4EP06730 217 aaKnown RBP12.01□□□□□ -0.49
SF3B1-204ENST00000414963 MGMTP16455 207 aa12.01□□□□□ -0.49
SF3B1-204ENST00000414963 ETV6P41212 452 aa12.01□□□□□ -0.49
SF3B1-204ENST00000414963 BIVMQ86UB2 503 aa12.01□□□□□ -0.49
SF3B1-204ENST00000414963 CCDC190Q86UF4 302 aa12.01□□□□□ -0.49
SF3B1-204ENST00000414963 FAM90A1Q86YD7 464 aa12.01□□□□□ -0.49
SF3B1-204ENST00000414963 LAX1Q8IWV1 398 aa12.01□□□□□ -0.49
SF3B1-204ENST00000414963 FAM58AQ8N1B3 248 aa12.01□□□□□ -0.49
SF3B1-204ENST00000414963 S100A16Q96FQ6 103 aaKnown RBP12.01□□□□□ -0.49
SF3B1-204ENST00000414963 Q96M66 194 aa12.01□□□□□ -0.49
SF3B1-204ENST00000414963 SOSTQ9BQB4 213 aa12.01□□□□□ -0.49
SF3B1-204ENST00000414963 NUDT16L1Q9BRJ7 211 aaKnown RBP12.01□□□□□ -0.49
SF3B1-204ENST00000414963 URM1Q9BTM9 101 aaKnown RBP12.01□□□□□ -0.49
SF3B1-204ENST00000414963 TMEM59Q9BXS4 323 aa12.01□□□□□ -0.49
SF3B1-204ENST00000414963 LPAR5Q9H1C0 372 aa12.01□□□□□ -0.49
SF3B1-204ENST00000414963 BANF2Q9H503 90 aa12.01□□□□□ -0.49
SF3B1-204ENST00000414963 SEBOXQ9HB31 216 aaPredicted RBP12.01□□□□□ -0.49
SF3B1-204ENST00000414963 RBFOX1Q9NWB1 397 aaKnown RBP12.01□□□□□ -0.49
SF3B1-204ENST00000414963 RNF7Q9UBF6 113 aa12.01□□□□□ -0.49
SF3B1-204ENST00000414963 IGHV1-69-2A0A0G2JMI3 117 aa12□□□□□ -0.49
SF3B1-204ENST00000414963 METTL21EPA6NDL7 271 aa12□□□□□ -0.49
SF3B1-204ENST00000414963 FAM90A10PA6NDY2 464 aa12□□□□□ -0.49
SF3B1-204ENST00000414963 FAM90A18PA6NE21 464 aa12□□□□□ -0.49
SF3B1-204ENST00000414963 FAM90A16PA6NEW6 464 aa12□□□□□ -0.49
SF3B1-204ENST00000414963 FAM90A20PA6NIJ5 464 aa12□□□□□ -0.49
SF3B1-204ENST00000414963 FAM90A8PA6NJQ4 464 aa12□□□□□ -0.49
SF3B1-204ENST00000414963 FAM90A7PA6NKC0 464 aa12□□□□□ -0.49
SF3B1-204ENST00000414963 LRRC30A6NM36 301 aa12□□□□□ -0.49
SF3B1-204ENST00000414963 FAM90A22PA8MWA6 464 aa12□□□□□ -0.49
SF3B1-204ENST00000414963 FAM90A12PA8MX19 464 aa12□□□□□ -0.49
SF3B1-204ENST00000414963 FAM90A5PA8MXJ8 464 aa12□□□□□ -0.49
SF3B1-204ENST00000414963 FAM90A23PA8MXZ1 464 aa12□□□□□ -0.49
SF3B1-204ENST00000414963 SCGNO76038 276 aa12□□□□□ -0.49
SF3B1-204ENST00000414963 MPIG6BO95866 241 aa12□□□□□ -0.49
SF3B1-204ENST00000414963 CHRM2P08172 466 aa12□□□□□ -0.49
SF3B1-204ENST00000414963 FAM90A15PP0C7V4 464 aa12□□□□□ -0.49
SF3B1-204ENST00000414963 FAM90A13PP0C7W8 464 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms